miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23714 5' -64.7 NC_005261.1 + 124891 0.67 0.461028
Target:  5'- cGGGuuccuGGCcGCCcCCGCCGCCaCG-CGg -3'
miRNA:   3'- -UCCu----CCGaCGGaGGCGGCGGcGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 124221 0.7 0.292196
Target:  5'- -cGuGGCUGCCagcagcccaaCCGCCGCCGCGg-- -3'
miRNA:   3'- ucCuCCGACGGa---------GGCGGCGGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 123616 0.71 0.249655
Target:  5'- cAGGuucAGGCUGCCcaUCaGCCGCUGCG-CGa -3'
miRNA:   3'- -UCC---UCCGACGG--AGgCGGCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 122571 0.66 0.482406
Target:  5'- aAGGc-GCUGCgcagCUCCGCCgcagcggccuuguacGCCGCGUUGu -3'
miRNA:   3'- -UCCucCGACG----GAGGCGG---------------CGGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 121805 0.7 0.312093
Target:  5'- cAGGGGGCgcguggcugGgCUCUgcggGCCGCCGCGgCGg -3'
miRNA:   3'- -UCCUCCGa--------CgGAGG----CGGCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 121637 0.67 0.421515
Target:  5'- ---cGGCgGCCgCCGCCGgcgagcgcgggcuguCCGCGUCGg -3'
miRNA:   3'- uccuCCGaCGGaGGCGGC---------------GGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 121414 0.68 0.377835
Target:  5'- -cGAcGGCUGCCgCCGCCGCUacgggGCGgCGg -3'
miRNA:   3'- ucCU-CCGACGGaGGCGGCGG-----CGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 120311 0.7 0.298716
Target:  5'- cGGcGAGGCUGUCUgCGaggcgCGCUGCGUCc -3'
miRNA:   3'- -UC-CUCCGACGGAgGCg----GCGGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 118618 0.67 0.418176
Target:  5'- cGGccGUUGCCcUgGCCGCCGCGgCGg -3'
miRNA:   3'- uCCucCGACGGaGgCGGCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 118582 0.67 0.435029
Target:  5'- cGGcGGC-GCgCgCCGCCGCCGCGg-- -3'
miRNA:   3'- uCCuCCGaCG-GaGGCGGCGGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 116529 0.66 0.506091
Target:  5'- -cGAGGCccGCCgcUCCGCgccCGCgCGCGUCa -3'
miRNA:   3'- ucCUCCGa-CGG--AGGCG---GCG-GCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 116009 0.68 0.362449
Target:  5'- -cGAGGCgGCCUgaGCCGCCGaCGgcgCGc -3'
miRNA:   3'- ucCUCCGaCGGAggCGGCGGC-GCa--GC- -5'
23714 5' -64.7 NC_005261.1 + 114561 0.66 0.469876
Target:  5'- cGGGGaGCgGCCgCCGCCGgaUCGCGUUc -3'
miRNA:   3'- uCCUC-CGaCGGaGGCGGC--GGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 112973 0.67 0.435029
Target:  5'- cGGcGGCcGCCaCCGCCGCCaucuuCGUCa -3'
miRNA:   3'- uCCuCCGaCGGaGGCGGCGGc----GCAGc -5'
23714 5' -64.7 NC_005261.1 + 111615 0.67 0.418176
Target:  5'- cGGcuGGGCUgcggcGCCgugCCGCCGCCGCc--- -3'
miRNA:   3'- uCC--UCCGA-----CGGa--GGCGGCGGCGcagc -5'
23714 5' -64.7 NC_005261.1 + 111304 0.74 0.148361
Target:  5'- -cGccGCUGCCUCCGCCGCCGCcgcgcgcUCGg -3'
miRNA:   3'- ucCucCGACGGAGGCGGCGGCGc------AGC- -5'
23714 5' -64.7 NC_005261.1 + 110296 0.68 0.401725
Target:  5'- uGGcGGGC-GCCUgCGCCGCCGaGUaCGg -3'
miRNA:   3'- uCC-UCCGaCGGAgGCGGCGGCgCA-GC- -5'
23714 5' -64.7 NC_005261.1 + 109807 0.68 0.401725
Target:  5'- cGGccGGCgccGCUUCCGCCGCgGCGg-- -3'
miRNA:   3'- uCCu-CCGa--CGGAGGCGGCGgCGCagc -5'
23714 5' -64.7 NC_005261.1 + 109756 0.69 0.347502
Target:  5'- ---cGGCU-CC-CgGCCGCCGCGUCGc -3'
miRNA:   3'- uccuCCGAcGGaGgCGGCGGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 109165 0.7 0.273304
Target:  5'- cAGGccGGGCagGuUCUCCGCuagcagCGCCGCGUCGg -3'
miRNA:   3'- -UCC--UCCGa-C-GGAGGCG------GCGGCGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.