miRNA display CGI


Results 41 - 60 of 169 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23714 5' -64.7 NC_005261.1 + 108633 0.66 0.484209
Target:  5'- gAGucGGCaaucuccgcgaagGCCUCCGCCaGCCccgGCGUCGc -3'
miRNA:   3'- -UCcuCCGa------------CGGAGGCGG-CGG---CGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 107798 0.67 0.460148
Target:  5'- uAGGAgggccucgcgcgcGGCgGCCcuagcggCCGCCGCCGCcUCu -3'
miRNA:   3'- -UCCU-------------CCGaCGGa------GGCGGCGGCGcAGc -5'
23714 5' -64.7 NC_005261.1 + 107699 0.73 0.197899
Target:  5'- cGGGGGCgccGCCgaacgUCGCUGCCGCGgcaggCGg -3'
miRNA:   3'- uCCUCCGa--CGGa----GGCGGCGGCGCa----GC- -5'
23714 5' -64.7 NC_005261.1 + 107288 0.68 0.370087
Target:  5'- cAGGcGGCagGCaCUCCGCCGCgGCcaCGg -3'
miRNA:   3'- -UCCuCCGa-CG-GAGGCGGCGgCGcaGC- -5'
23714 5' -64.7 NC_005261.1 + 107159 0.68 0.362449
Target:  5'- uGGAGGCggccagcGCCUCCGUCucgGCgGCGUa- -3'
miRNA:   3'- uCCUCCGa------CGGAGGCGG---CGgCGCAgc -5'
23714 5' -64.7 NC_005261.1 + 106863 0.67 0.461028
Target:  5'- uGGGGGGCggGCgUCCGCgGCCuCG-Ca -3'
miRNA:   3'- -UCCUCCGa-CGgAGGCGgCGGcGCaGc -5'
23714 5' -64.7 NC_005261.1 + 106327 0.7 0.305348
Target:  5'- cGuGAGcCacgGCC-CCGCCGCCGCGUCc -3'
miRNA:   3'- uC-CUCcGa--CGGaGGCGGCGGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 106256 0.66 0.496921
Target:  5'- --cGGGCcGCCgCCGCCGCUGcCGcCGg -3'
miRNA:   3'- uccUCCGaCGGaGGCGGCGGC-GCaGC- -5'
23714 5' -64.7 NC_005261.1 + 106031 0.74 0.161122
Target:  5'- cGGAGGCacGCCaCCGCgcugcccggcccuagCGCCGCGUCGu -3'
miRNA:   3'- uCCUCCGa-CGGaGGCG---------------GCGGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 105165 0.72 0.202621
Target:  5'- gAGGGcGGCguccacgggGCCcgCCGCCGCCGCGg-- -3'
miRNA:   3'- -UCCU-CCGa--------CGGa-GGCGGCGGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 105110 0.68 0.373174
Target:  5'- cGGGGGCUuGCCcgcgcgggcgcgggCCGCCGgCGCG-CGc -3'
miRNA:   3'- uCCUCCGA-CGGa-------------GGCGGCgGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 104565 0.71 0.265427
Target:  5'- cAGGucgcccagcgcugaGGGCUgcgcgcgcaucGCCUCCGCCaGCCGCG-CGu -3'
miRNA:   3'- -UCC--------------UCCGA-----------CGGAGGCGG-CGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 104094 0.66 0.478809
Target:  5'- cAGGGcGGCgGCgCUCCGCgcgaccgcaGCCGCG-CGg -3'
miRNA:   3'- -UCCU-CCGaCG-GAGGCGg--------CGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 103967 0.72 0.223017
Target:  5'- cGGcGGCcGCCacacggaagcgcucgCCGCCGCCGCgGUCGg -3'
miRNA:   3'- uCCuCCGaCGGa--------------GGCGGCGGCG-CAGC- -5'
23714 5' -64.7 NC_005261.1 + 103561 0.71 0.267228
Target:  5'- cAGG-GGCcccgUGCCgCCGCCGCCcGCGcCGu -3'
miRNA:   3'- -UCCuCCG----ACGGaGGCGGCGG-CGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 103222 0.66 0.487825
Target:  5'- cAGGAaGCgcgcgcaGuCCUCCGCCGuCCGCG-CGc -3'
miRNA:   3'- -UCCUcCGa------C-GGAGGCGGC-GGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 102954 0.73 0.186067
Target:  5'- cGGcGGCgGCCgcgggcgccgcgggcUCCGCCGCCGCGcgCGa -3'
miRNA:   3'- uCCuCCGaCGG---------------AGGCGGCGGCGCa-GC- -5'
23714 5' -64.7 NC_005261.1 + 102701 0.69 0.347502
Target:  5'- -cGucGCUGCCgCCGucuCCGCCGCGUCc -3'
miRNA:   3'- ucCucCGACGGaGGC---GGCGGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 102554 0.68 0.370087
Target:  5'- cAGGcgcccGGCggacaccGCCU-CGCCGuCCGCGUCGg -3'
miRNA:   3'- -UCCu----CCGa------CGGAgGCGGC-GGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 101235 0.68 0.409899
Target:  5'- gAGGuGGC-GCCUCaGCuCGCgcagCGCGUCGa -3'
miRNA:   3'- -UCCuCCGaCGGAGgCG-GCG----GCGCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.