Results 61 - 80 of 169 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23714 | 5' | -64.7 | NC_005261.1 | + | 101142 | 0.74 | 0.167463 |
Target: 5'- -cGAGGCUGCCgcgcggcggCgCGCCGCCGCGa-- -3' miRNA: 3'- ucCUCCGACGGa--------G-GCGGCGGCGCagc -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 100975 | 0.66 | 0.507013 |
Target: 5'- uGGaAGGCgcccagcgcgucgccGCgCUCCGCCaGCCGCG-CGu -3' miRNA: 3'- uCC-UCCGa--------------CG-GAGGCGG-CGGCGCaGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 100381 | 0.71 | 0.238478 |
Target: 5'- -cGAGGCcGCCUCCaccacGCCGCCGuUGUCc -3' miRNA: 3'- ucCUCCGaCGGAGG-----CGGCGGC-GCAGc -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 100075 | 0.71 | 0.255405 |
Target: 5'- cGGGGGCgcGCCgcgccccucgCCGCCGCCGCuGcCGc -3' miRNA: 3'- uCCUCCGa-CGGa---------GGCGGCGGCG-CaGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 99856 | 0.7 | 0.273304 |
Target: 5'- cGGcaccGGCcGCCgcgcgCCGCCGCCGC-UCGg -3' miRNA: 3'- uCCu---CCGaCGGa----GGCGGCGGCGcAGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 99697 | 0.69 | 0.343105 |
Target: 5'- -uGAGGCgcGCCagcUCCGCCacggucgcgcgcgugGCCGCGUCa -3' miRNA: 3'- ucCUCCGa-CGG---AGGCGG---------------CGGCGCAGc -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 99472 | 0.72 | 0.21536 |
Target: 5'- cGGcGGCgcuggccgcugcgGCCagCGCCGCCGCGUCc -3' miRNA: 3'- uCCuCCGa------------CGGagGCGGCGGCGCAGc -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 98764 | 0.67 | 0.426553 |
Target: 5'- ---cGGUUGCCgcugCCGCCGCCGgcCGcCGg -3' miRNA: 3'- uccuCCGACGGa---GGCGGCGGC--GCaGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 98309 | 0.71 | 0.238478 |
Target: 5'- cGGGGGCggGCg-CCGCCGCCaGCGgCGg -3' miRNA: 3'- uCCUCCGa-CGgaGGCGGCGG-CGCaGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 97842 | 0.7 | 0.312093 |
Target: 5'- cGGGGGCgGCgggCGCCGCCGCGgcagCGc -3' miRNA: 3'- uCCUCCGaCGgagGCGGCGGCGCa---GC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 97498 | 0.71 | 0.263635 |
Target: 5'- uGGGGGC-GCCggggCCGCCggaacguuucggcucGCCGCGaUCGg -3' miRNA: 3'- uCCUCCGaCGGa---GGCGG---------------CGGCGC-AGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 97102 | 0.67 | 0.452269 |
Target: 5'- cGGGGGCgccaGCCgggCCGCggccggaggCGCCGCGg-- -3' miRNA: 3'- uCCUCCGa---CGGa--GGCG---------GCGGCGCagc -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 95762 | 0.68 | 0.409899 |
Target: 5'- cGGGGGCgccgggaGCCU-CGCgCGCUGCGcCGg -3' miRNA: 3'- uCCUCCGa------CGGAgGCG-GCGGCGCaGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 95013 | 0.66 | 0.487825 |
Target: 5'- gGGGcGGGCUauaaaGCCgCCGCCGgCgGCGcUCGg -3' miRNA: 3'- -UCC-UCCGA-----CGGaGGCGGC-GgCGC-AGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 90770 | 0.67 | 0.426553 |
Target: 5'- -cGAGGCcGCCgaggCCGCUGCgGCGgcCGg -3' miRNA: 3'- ucCUCCGaCGGa---GGCGGCGgCGCa-GC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 88325 | 0.8 | 0.056694 |
Target: 5'- gGGGAGGCUgcaaggcuggcggcGCC-CCGCCGCCGCGgCGu -3' miRNA: 3'- -UCCUCCGA--------------CGGaGGCGGCGGCGCaGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 87779 | 0.68 | 0.377835 |
Target: 5'- -cGAGGgUcaccGUCUUgGCCGCCGCGUCc -3' miRNA: 3'- ucCUCCgA----CGGAGgCGGCGGCGCAGc -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 84364 | 0.74 | 0.15957 |
Target: 5'- aAGGcgccgcccgcGGGCUcgGCCUCgGCCGCCGCcUCGa -3' miRNA: 3'- -UCC----------UCCGA--CGGAGgCGGCGGCGcAGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 83056 | 0.68 | 0.401725 |
Target: 5'- gAGGGGGCUcCCUgCgCGCCcCCGCGgCGg -3' miRNA: 3'- -UCCUCCGAcGGA-G-GCGGcGGCGCaGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 82990 | 0.74 | 0.152015 |
Target: 5'- cGGAGGCggccGCCUCgCGCaccgaGCCGcCGUCGc -3' miRNA: 3'- uCCUCCGa---CGGAG-GCGg----CGGC-GCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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