miRNA display CGI


Results 61 - 80 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23714 5' -64.7 NC_005261.1 + 95013 0.66 0.487825
Target:  5'- gGGGcGGGCUauaaaGCCgCCGCCGgCgGCGcUCGg -3'
miRNA:   3'- -UCC-UCCGA-----CGGaGGCGGC-GgCGC-AGC- -5'
23714 5' -64.7 NC_005261.1 + 108633 0.66 0.484209
Target:  5'- gAGucGGCaaucuccgcgaagGCCUCCGCCaGCCccgGCGUCGc -3'
miRNA:   3'- -UCcuCCGa------------CGGAGGCGG-CGG---CGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 44029 0.66 0.469876
Target:  5'- cGGGcGGCcGCCgcgCgGCgGCCGCGggCGg -3'
miRNA:   3'- -UCCuCCGaCGGa--GgCGgCGGCGCa-GC- -5'
23714 5' -64.7 NC_005261.1 + 114561 0.66 0.469876
Target:  5'- cGGGGaGCgGCCgCCGCCGgaUCGCGUUc -3'
miRNA:   3'- uCCUC-CGaCGGaGGCGGC--GGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 64118 0.66 0.469876
Target:  5'- cGGGcGGCacgUGCCgcgCgGCCGCCagcGCGUCc -3'
miRNA:   3'- -UCCuCCG---ACGGa--GgCGGCGG---CGCAGc -5'
23714 5' -64.7 NC_005261.1 + 2788 0.66 0.469876
Target:  5'- gAGG-GGCUGCCgCCgGCgGCCGgGagGg -3'
miRNA:   3'- -UCCuCCGACGGaGG-CGgCGGCgCagC- -5'
23714 5' -64.7 NC_005261.1 + 59655 0.67 0.461028
Target:  5'- -cGAGGCggGCgaCUGCgGCCGgGUCGu -3'
miRNA:   3'- ucCUCCGa-CGgaGGCGgCGGCgCAGC- -5'
23714 5' -64.7 NC_005261.1 + 124891 0.67 0.461028
Target:  5'- cGGGuuccuGGCcGCCcCCGCCGCCaCG-CGg -3'
miRNA:   3'- -UCCu----CCGaCGGaGGCGGCGGcGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 106863 0.67 0.461028
Target:  5'- uGGGGGGCggGCgUCCGCgGCCuCG-Ca -3'
miRNA:   3'- -UCCUCCGa-CGgAGGCGgCGGcGCaGc -5'
23714 5' -64.7 NC_005261.1 + 107798 0.67 0.460148
Target:  5'- uAGGAgggccucgcgcgcGGCgGCCcuagcggCCGCCGCCGCcUCu -3'
miRNA:   3'- -UCCU-------------CCGaCGGa------GGCGGCGGCGcAGc -5'
23714 5' -64.7 NC_005261.1 + 47690 0.66 0.469876
Target:  5'- ---cGGCcGCC-CgCGgCGCCGCGUCGg -3'
miRNA:   3'- uccuCCGaCGGaG-GCgGCGGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 126510 0.66 0.469876
Target:  5'- cAGGcGGuCUGCCUgggcgcCCGCgccCGCCGCGccUCGg -3'
miRNA:   3'- -UCCuCC-GACGGA------GGCG---GCGGCGC--AGC- -5'
23714 5' -64.7 NC_005261.1 + 122571 0.66 0.482406
Target:  5'- aAGGc-GCUGCgcagCUCCGCCgcagcggccuuguacGCCGCGUUGu -3'
miRNA:   3'- -UCCucCGACG----GAGGCGG---------------CGGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 68296 0.66 0.478809
Target:  5'- cGGccgcGGGCgcgGaCCUCUGCgGCCGCuUCGa -3'
miRNA:   3'- uCC----UCCGa--C-GGAGGCGgCGGCGcAGC- -5'
23714 5' -64.7 NC_005261.1 + 42673 0.66 0.478809
Target:  5'- cGGcGGCcggGCCgCCGCCggcaGCCGCG-CGg -3'
miRNA:   3'- uCCuCCGa--CGGaGGCGG----CGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 126678 0.66 0.478809
Target:  5'- cGGGAGGCccuCCUCCGagGCCgGCGgugCGg -3'
miRNA:   3'- -UCCUCCGac-GGAGGCggCGG-CGCa--GC- -5'
23714 5' -64.7 NC_005261.1 + 104094 0.66 0.478809
Target:  5'- cAGGGcGGCgGCgCUCCGCgcgaccgcaGCCGCG-CGg -3'
miRNA:   3'- -UCCU-CCGaCG-GAGGCGg--------CGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 42631 0.66 0.478809
Target:  5'- cAGcGGGGacucgGCCgCCGCgGCCGCG-CGg -3'
miRNA:   3'- -UC-CUCCga---CGGaGGCGgCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 29298 0.66 0.478809
Target:  5'- cGGcGAGGCcugGCCcggcagcgcgCCGCCGCCGCc-CGg -3'
miRNA:   3'- -UC-CUCCGa--CGGa---------GGCGGCGGCGcaGC- -5'
23714 5' -64.7 NC_005261.1 + 5976 0.66 0.478809
Target:  5'- ---cGGCU-CCUCUGCCGC-GCGUCu -3'
miRNA:   3'- uccuCCGAcGGAGGCGGCGgCGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.