miRNA display CGI


Results 81 - 100 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23714 5' -64.7 NC_005261.1 + 33966 0.67 0.443602
Target:  5'- uGGAccuuCUGCCgccgCCGCCGCCGCccCGg -3'
miRNA:   3'- uCCUcc--GACGGa---GGCGGCGGCGcaGC- -5'
23714 5' -64.7 NC_005261.1 + 43832 0.67 0.44102
Target:  5'- uGGAGaaGCUGCUcggcgagggcgaggaCGCgGCCGCGUCGu -3'
miRNA:   3'- uCCUC--CGACGGag-------------GCGgCGGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 75583 0.67 0.435029
Target:  5'- cGGcGGCgcgGCgCUCgCGCgCGCCGCGgacgCGg -3'
miRNA:   3'- uCCuCCGa--CG-GAG-GCG-GCGGCGCa---GC- -5'
23714 5' -64.7 NC_005261.1 + 48804 0.67 0.435029
Target:  5'- cGuGAGGCcgugcgcgGCgUCCGCgaCGCCGuCGUCGg -3'
miRNA:   3'- uC-CUCCGa-------CGgAGGCG--GCGGC-GCAGC- -5'
23714 5' -64.7 NC_005261.1 + 17176 0.67 0.435029
Target:  5'- cGGGcguGGGCaGCC-CUGCCGCgGCGgCGa -3'
miRNA:   3'- -UCC---UCCGaCGGaGGCGGCGgCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 118582 0.67 0.435029
Target:  5'- cGGcGGC-GCgCgCCGCCGCCGCGg-- -3'
miRNA:   3'- uCCuCCGaCG-GaGGCGGCGGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 112973 0.67 0.435029
Target:  5'- cGGcGGCcGCCaCCGCCGCCaucuuCGUCa -3'
miRNA:   3'- uCCuCCGaCGGaGGCGGCGGc----GCAGc -5'
23714 5' -64.7 NC_005261.1 + 107798 0.67 0.460148
Target:  5'- uAGGAgggccucgcgcgcGGCgGCCcuagcggCCGCCGCCGCcUCu -3'
miRNA:   3'- -UCCU-------------CCGaCGGa------GGCGGCGGCGcAGc -5'
23714 5' -64.7 NC_005261.1 + 106863 0.67 0.461028
Target:  5'- uGGGGGGCggGCgUCCGCgGCCuCG-Ca -3'
miRNA:   3'- -UCCUCCGa-CGgAGGCGgCGGcGCaGc -5'
23714 5' -64.7 NC_005261.1 + 124891 0.67 0.461028
Target:  5'- cGGGuuccuGGCcGCCcCCGCCGCCaCG-CGg -3'
miRNA:   3'- -UCCu----CCGaCGGaGGCGGCGGcGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 42631 0.66 0.478809
Target:  5'- cAGcGGGGacucgGCCgCCGCgGCCGCG-CGg -3'
miRNA:   3'- -UC-CUCCga---CGGaGGCGgCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 29298 0.66 0.478809
Target:  5'- cGGcGAGGCcugGCCcggcagcgcgCCGCCGCCGCc-CGg -3'
miRNA:   3'- -UC-CUCCGa--CGGa---------GGCGGCGGCGcaGC- -5'
23714 5' -64.7 NC_005261.1 + 5976 0.66 0.478809
Target:  5'- ---cGGCU-CCUCUGCCGC-GCGUCu -3'
miRNA:   3'- uccuCCGAcGGAGGCGGCGgCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 126510 0.66 0.469876
Target:  5'- cAGGcGGuCUGCCUgggcgcCCGCgccCGCCGCGccUCGg -3'
miRNA:   3'- -UCCuCC-GACGGA------GGCG---GCGGCGC--AGC- -5'
23714 5' -64.7 NC_005261.1 + 47690 0.66 0.469876
Target:  5'- ---cGGCcGCC-CgCGgCGCCGCGUCGg -3'
miRNA:   3'- uccuCCGaCGGaG-GCgGCGGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 44029 0.66 0.469876
Target:  5'- cGGGcGGCcGCCgcgCgGCgGCCGCGggCGg -3'
miRNA:   3'- -UCCuCCGaCGGa--GgCGgCGGCGCa-GC- -5'
23714 5' -64.7 NC_005261.1 + 114561 0.66 0.469876
Target:  5'- cGGGGaGCgGCCgCCGCCGgaUCGCGUUc -3'
miRNA:   3'- uCCUC-CGaCGGaGGCGGC--GGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 64118 0.66 0.469876
Target:  5'- cGGGcGGCacgUGCCgcgCgGCCGCCagcGCGUCc -3'
miRNA:   3'- -UCCuCCG---ACGGa--GgCGGCGG---CGCAGc -5'
23714 5' -64.7 NC_005261.1 + 2788 0.66 0.469876
Target:  5'- gAGG-GGCUGCCgCCgGCgGCCGgGagGg -3'
miRNA:   3'- -UCCuCCGACGGaGG-CGgCGGCgCagC- -5'
23714 5' -64.7 NC_005261.1 + 59655 0.67 0.461028
Target:  5'- -cGAGGCggGCgaCUGCgGCCGgGUCGu -3'
miRNA:   3'- ucCUCCGa-CGgaGGCGgCGGCgCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.