miRNA display CGI


Results 41 - 60 of 715 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23715 5' -67 NC_005261.1 + 88560 0.66 0.44873
Target:  5'- -aCCCGa-GCgCCGGCGACgCGUC-CCg -3'
miRNA:   3'- ccGGGCgcCGgGGCCGCUG-GCAGcGG- -5'
23715 5' -67 NC_005261.1 + 37469 0.66 0.4521
Target:  5'- uGCUCGcCGGCacCCCGGCGuaucgggacuugGCCGUccagguccuugagaaCGCCu -3'
miRNA:   3'- cCGGGC-GCCG--GGGCCGC------------UGGCA---------------GCGG- -5'
23715 5' -67 NC_005261.1 + 59871 0.66 0.457179
Target:  5'- cGGCCuCGUacgGGUgCCGGCGGgcagcagcUCGUCGUa -3'
miRNA:   3'- -CCGG-GCG---CCGgGGCCGCU--------GGCAGCGg -5'
23715 5' -67 NC_005261.1 + 41110 0.66 0.446212
Target:  5'- cGUCCGCGGCgggcccgagcgcuuCCUGcGUGGCgCG-CGCCa -3'
miRNA:   3'- cCGGGCGCCG--------------GGGC-CGCUG-GCaGCGG- -5'
23715 5' -67 NC_005261.1 + 132871 0.66 0.457179
Target:  5'- aGCCUGCGccuGCCCuucuuCGGCaaGCCGggCGCCg -3'
miRNA:   3'- cCGGGCGC---CGGG-----GCCGc-UGGCa-GCGG- -5'
23715 5' -67 NC_005261.1 + 77370 0.66 0.440368
Target:  5'- aGGCCagCGCGuCUCCGGCGcACCcccUGCCg -3'
miRNA:   3'- -CCGG--GCGCcGGGGCCGC-UGGca-GCGG- -5'
23715 5' -67 NC_005261.1 + 112707 0.66 0.423915
Target:  5'- uGCCCGUgcaGGaCCUGGCGuuccUCGUCGUCc -3'
miRNA:   3'- cCGGGCG---CCgGGGCCGCu---GGCAGCGG- -5'
23715 5' -67 NC_005261.1 + 49922 0.66 0.423915
Target:  5'- uGGCCCGCcucgaGGCgCCC-GCGgaGCCG-CGCa -3'
miRNA:   3'- -CCGGGCG-----CCG-GGGcCGC--UGGCaGCGg -5'
23715 5' -67 NC_005261.1 + 80003 0.66 0.440368
Target:  5'- cGGCCgagcucacgGUGGUCaCCcgcuuguuGGCGucGCCGUCGCCg -3'
miRNA:   3'- -CCGGg--------CGCCGG-GG--------CCGC--UGGCAGCGG- -5'
23715 5' -67 NC_005261.1 + 62823 0.66 0.454635
Target:  5'- cGCCgCGCGGggcaCCGGCGGgggacuggcgcgccCCG-CGCCa -3'
miRNA:   3'- cCGG-GCGCCgg--GGCCGCU--------------GGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 39335 0.66 0.423915
Target:  5'- cGCcgCCGCGGCCaagcugcgcgCGGCGGCaGcCGCCu -3'
miRNA:   3'- cCG--GGCGCCGGg---------GCCGCUGgCaGCGG- -5'
23715 5' -67 NC_005261.1 + 127619 0.66 0.42229
Target:  5'- cGCuaGCGGCCggccggacgcgaCGGCGGCgG-CGCCg -3'
miRNA:   3'- cCGggCGCCGGg-----------GCCGCUGgCaGCGG- -5'
23715 5' -67 NC_005261.1 + 57381 0.66 0.446212
Target:  5'- cGCCCGCcagcagcucggggaGcGCgCCCGugauccGCGGCCGgCGCCg -3'
miRNA:   3'- cCGGGCG--------------C-CG-GGGC------CGCUGGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 58689 0.66 0.423915
Target:  5'- aGGCCCG-GGCCgUcagGGCGcGCCGcugagaggugCGCCa -3'
miRNA:   3'- -CCGGGCgCCGGgG---CCGC-UGGCa---------GCGG- -5'
23715 5' -67 NC_005261.1 + 32612 0.66 0.457179
Target:  5'- cGUCCGCGuCCUCGGaCGacgaGCCGggcUCGCCc -3'
miRNA:   3'- cCGGGCGCcGGGGCC-GC----UGGC---AGCGG- -5'
23715 5' -67 NC_005261.1 + 6347 0.66 0.423915
Target:  5'- uGCCCacCGGCCUCGcGcCGGuCCGgCGCCg -3'
miRNA:   3'- cCGGGc-GCCGGGGC-C-GCU-GGCaGCGG- -5'
23715 5' -67 NC_005261.1 + 117983 0.66 0.440368
Target:  5'- gGGCgCGCacaccGGCCUgaCGGCGGCgG-CGCUg -3'
miRNA:   3'- -CCGgGCG-----CCGGG--GCCGCUGgCaGCGG- -5'
23715 5' -67 NC_005261.1 + 69164 0.66 0.423915
Target:  5'- cGCgCCGcCGcGCCCCuugacgagGGC-ACCGUCGCg -3'
miRNA:   3'- cCG-GGC-GC-CGGGG--------CCGcUGGCAGCGg -5'
23715 5' -67 NC_005261.1 + 123224 0.66 0.44873
Target:  5'- cGGCCUGCcGCCUa-GCGGCCGcccaggCGCg -3'
miRNA:   3'- -CCGGGCGcCGGGgcCGCUGGCa-----GCGg -5'
23715 5' -67 NC_005261.1 + 131570 0.66 0.440368
Target:  5'- cGCCCgGCuGCCCCccgcGaCGGCCGagGCCu -3'
miRNA:   3'- cCGGG-CGcCGGGGc---C-GCUGGCagCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.