miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23716 5' -60.1 NC_005261.1 + 4886 0.67 0.679683
Target:  5'- gCCUCaGCCGcg---GCCGCCUcGGCUu -3'
miRNA:   3'- -GGGGcCGGCucaaaCGGCGGAaCCGA- -5'
23716 5' -60.1 NC_005261.1 + 110831 0.67 0.669743
Target:  5'- gCCgCGGaCGAGUUuccgcUGcCCGCCcUGGCg -3'
miRNA:   3'- -GGgGCCgGCUCAA-----AC-GGCGGaACCGa -5'
23716 5' -60.1 NC_005261.1 + 2973 0.67 0.659774
Target:  5'- gCCCgGGCUGAGgcugggGCUcgGCC-UGGCg -3'
miRNA:   3'- -GGGgCCGGCUCaaa---CGG--CGGaACCGa -5'
23716 5' -60.1 NC_005261.1 + 30173 0.67 0.659774
Target:  5'- gCCCGccgcgcugcgcGCCGAGgcgGCCGCCgcgcuggaGGCg -3'
miRNA:   3'- gGGGC-----------CGGCUCaaaCGGCGGaa------CCGa -5'
23716 5' -60.1 NC_005261.1 + 79855 0.67 0.657777
Target:  5'- gCCgCCGcGCUGGGguugagcuugGCCGCCUcGGCc -3'
miRNA:   3'- -GG-GGC-CGGCUCaaa-------CGGCGGAaCCGa -5'
23716 5' -60.1 NC_005261.1 + 4752 0.67 0.649784
Target:  5'- uCCCCGGCuCGGGcuuggGCCugGCUUcGGCUu -3'
miRNA:   3'- -GGGGCCG-GCUCaaa--CGG--CGGAaCCGA- -5'
23716 5' -60.1 NC_005261.1 + 28760 0.67 0.649784
Target:  5'- gCCgCGGCCGGGg--G-CGCCUgGGCc -3'
miRNA:   3'- -GGgGCCGGCUCaaaCgGCGGAaCCGa -5'
23716 5' -60.1 NC_005261.1 + 74534 0.67 0.649784
Target:  5'- gCUUgGGCgccuaGAGUUUGCCuGCCUgGGCg -3'
miRNA:   3'- -GGGgCCGg----CUCAAACGG-CGGAaCCGa -5'
23716 5' -60.1 NC_005261.1 + 21215 0.67 0.649784
Target:  5'- gCCCCGGCCGcgacGGcggGCCcGUCggcUGGCg -3'
miRNA:   3'- -GGGGCCGGC----UCaaaCGG-CGGa--ACCGa -5'
23716 5' -60.1 NC_005261.1 + 19945 0.67 0.63978
Target:  5'- gUCCUGGgCGGGggugggGCgGCCUcGGCUg -3'
miRNA:   3'- -GGGGCCgGCUCaaa---CGgCGGAaCCGA- -5'
23716 5' -60.1 NC_005261.1 + 39194 0.67 0.636777
Target:  5'- gCCCCGG-CGAGcagccgcaccgguaGCCGCCaUGGCc -3'
miRNA:   3'- -GGGGCCgGCUCaaa-----------CGGCGGaACCGa -5'
23716 5' -60.1 NC_005261.1 + 2778 0.67 0.629771
Target:  5'- gCCCGcccCCGAGgggcUGCCGCCggcGGCc -3'
miRNA:   3'- gGGGCc--GGCUCaa--ACGGCGGaa-CCGa -5'
23716 5' -60.1 NC_005261.1 + 23779 0.67 0.629771
Target:  5'- -gCCGGCUaGGGUggGCuCGCCggGGCa -3'
miRNA:   3'- ggGGCCGG-CUCAaaCG-GCGGaaCCGa -5'
23716 5' -60.1 NC_005261.1 + 23836 0.67 0.629771
Target:  5'- -gCCGGCUaGGGUggGCuCGCCggGGCa -3'
miRNA:   3'- ggGGCCGG-CUCAaaCG-GCGGaaCCGa -5'
23716 5' -60.1 NC_005261.1 + 125706 0.67 0.629771
Target:  5'- gCCCGG-CGAcg--GCCGCCgcgGGCUc -3'
miRNA:   3'- gGGGCCgGCUcaaaCGGCGGaa-CCGA- -5'
23716 5' -60.1 NC_005261.1 + 106951 0.68 0.619763
Target:  5'- aCCUCGGcCCGGGcgcgcuCCGCCUcGGCg -3'
miRNA:   3'- -GGGGCC-GGCUCaaac--GGCGGAaCCGa -5'
23716 5' -60.1 NC_005261.1 + 59666 0.68 0.609764
Target:  5'- aCUgCGGCCGGGUcgucgaaGCCGCCcucGGCc -3'
miRNA:   3'- -GGgGCCGGCUCAaa-----CGGCGGaa-CCGa -5'
23716 5' -60.1 NC_005261.1 + 77581 0.68 0.609764
Target:  5'- gCCCUGGCacccCGGGUacggcuucccGCCGCCggGGCUc -3'
miRNA:   3'- -GGGGCCG----GCUCAaa--------CGGCGGaaCCGA- -5'
23716 5' -60.1 NC_005261.1 + 39378 0.68 0.609764
Target:  5'- --gCGGCCGGGgaggGCgGCCcUGGCg -3'
miRNA:   3'- gggGCCGGCUCaaa-CGgCGGaACCGa -5'
23716 5' -60.1 NC_005261.1 + 14529 0.68 0.609764
Target:  5'- gCCCGGCgGuGgcgcgGCCGCCc-GGCg -3'
miRNA:   3'- gGGGCCGgCuCaaa--CGGCGGaaCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.