miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23717 3' -53.2 NC_005261.1 + 116270 0.66 0.959697
Target:  5'- --cGC-CCGGCGGCgucGUGAUGGCGu- -3'
miRNA:   3'- uguCGcGGCUGCUGa--UACUAUCGCua -5'
23717 3' -53.2 NC_005261.1 + 93681 0.66 0.958946
Target:  5'- gGCGGCGCCGGCGGggcgcc-GGCGGg -3'
miRNA:   3'- -UGUCGCGGCUGCUgauacuaUCGCUa -5'
23717 3' -53.2 NC_005261.1 + 69304 0.66 0.955845
Target:  5'- -gGGCGCCGgugGCGGCgggagcggggGUGAcGGCGAc -3'
miRNA:   3'- ugUCGCGGC---UGCUGa---------UACUaUCGCUa -5'
23717 3' -53.2 NC_005261.1 + 104998 0.66 0.951749
Target:  5'- cCAGCGCgGGCGGCggucgGGgcgccagGGCGGUg -3'
miRNA:   3'- uGUCGCGgCUGCUGaua--CUa------UCGCUA- -5'
23717 3' -53.2 NC_005261.1 + 14667 0.66 0.951749
Target:  5'- uGCcGCGCgCGGCGuuuauucuucGCUgAUGGUGGCGAg -3'
miRNA:   3'- -UGuCGCG-GCUGC----------UGA-UACUAUCGCUa -5'
23717 3' -53.2 NC_005261.1 + 75482 0.66 0.951749
Target:  5'- gGCGGCGCgGGCcGCUAcGAgcGCGGg -3'
miRNA:   3'- -UGUCGCGgCUGcUGAUaCUauCGCUa -5'
23717 3' -53.2 NC_005261.1 + 253 0.66 0.947407
Target:  5'- gGCuGCGgCGGCGGCUGcGGcGGCGGc -3'
miRNA:   3'- -UGuCGCgGCUGCUGAUaCUaUCGCUa -5'
23717 3' -53.2 NC_005261.1 + 137972 0.66 0.947407
Target:  5'- gGCuGCGgCGGCGGCUGcGGcGGCGGc -3'
miRNA:   3'- -UGuCGCgGCUGCUGAUaCUaUCGCUa -5'
23717 3' -53.2 NC_005261.1 + 101465 0.66 0.947407
Target:  5'- cCAGCGCCGccgGCGGCggcGUGAUGcGCa-- -3'
miRNA:   3'- uGUCGCGGC---UGCUGa--UACUAU-CGcua -5'
23717 3' -53.2 NC_005261.1 + 137936 0.66 0.947407
Target:  5'- gGCuGCGgCGGCGGCUGcGGcGGCGGc -3'
miRNA:   3'- -UGuCGCgGCUGCUGAUaCUaUCGCUa -5'
23717 3' -53.2 NC_005261.1 + 109829 0.66 0.947407
Target:  5'- gGCGGcCGCCGAaucUGGCgugccguUGGUGGCGGc -3'
miRNA:   3'- -UGUC-GCGGCU---GCUGau-----ACUAUCGCUa -5'
23717 3' -53.2 NC_005261.1 + 289 0.66 0.947407
Target:  5'- gGCuGCGgCGGCGGCUGcGGcGGCGGc -3'
miRNA:   3'- -UGuCGCgGCUGCUGAUaCUaUCGCUa -5'
23717 3' -53.2 NC_005261.1 + 42439 0.66 0.942814
Target:  5'- gAUGGUGUugaugUGACGGCUGUGGUAGgCGGc -3'
miRNA:   3'- -UGUCGCG-----GCUGCUGAUACUAUC-GCUa -5'
23717 3' -53.2 NC_005261.1 + 68604 0.66 0.942814
Target:  5'- aGCGGgGCCGACGGC-GUGggGGagGAUg -3'
miRNA:   3'- -UGUCgCGGCUGCUGaUACuaUCg-CUA- -5'
23717 3' -53.2 NC_005261.1 + 34606 0.66 0.942341
Target:  5'- gACGGCcugGCCGACGcGCUGgagccccUGAUAGgCGAg -3'
miRNA:   3'- -UGUCG---CGGCUGC-UGAU-------ACUAUC-GCUa -5'
23717 3' -53.2 NC_005261.1 + 102935 0.67 0.921893
Target:  5'- cGCAGCGCCGcCGccGCUGcGGcGGCGGc -3'
miRNA:   3'- -UGUCGCGGCuGC--UGAUaCUaUCGCUa -5'
23717 3' -53.2 NC_005261.1 + 35984 0.67 0.921893
Target:  5'- gUAGCGgCGGCGGCUccUGGcGGCGGUa -3'
miRNA:   3'- uGUCGCgGCUGCUGAu-ACUaUCGCUA- -5'
23717 3' -53.2 NC_005261.1 + 88190 0.67 0.921318
Target:  5'- gGCGGCGCCGGCGA-------GGCGGg -3'
miRNA:   3'- -UGUCGCGGCUGCUgauacuaUCGCUa -5'
23717 3' -53.2 NC_005261.1 + 52978 0.67 0.916022
Target:  5'- uGCGGCGCCGGCaGGCgggGGcGGCGc- -3'
miRNA:   3'- -UGUCGCGGCUG-CUGauaCUaUCGCua -5'
23717 3' -53.2 NC_005261.1 + 88806 0.68 0.909895
Target:  5'- aGCAGgaCGCCGGCGGCgg-GGcGGCGGc -3'
miRNA:   3'- -UGUC--GCGGCUGCUGauaCUaUCGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.