miRNA display CGI


Results 1 - 20 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23717 5' -62 NC_005261.1 + 97470 0.66 0.654521
Target:  5'- gGAUCGCcaaaaccgucgggggGGCCCU--UgGgGGCGCCGg -3'
miRNA:   3'- aCUGGCG---------------CCGGGGuuAgUgCCGCGGC- -5'
23717 5' -62 NC_005261.1 + 104528 0.66 0.650583
Target:  5'- cGACgGCGGCCgCCAccaggCGCagcuuGGCGuCCGc -3'
miRNA:   3'- aCUGgCGCCGG-GGUua---GUG-----CCGC-GGC- -5'
23717 5' -62 NC_005261.1 + 63570 0.66 0.650583
Target:  5'- cGGCCGgcaugaUGGgCCCGAagaGCGGCGCgGg -3'
miRNA:   3'- aCUGGC------GCCgGGGUUag-UGCCGCGgC- -5'
23717 5' -62 NC_005261.1 + 103604 0.66 0.650583
Target:  5'- gUGGCCGCGGCggcagcgCgGGagGCGGCGgCGg -3'
miRNA:   3'- -ACUGGCGCCGg------GgUUagUGCCGCgGC- -5'
23717 5' -62 NC_005261.1 + 67785 0.66 0.650583
Target:  5'- cGGCCGC--CCCCuccUCcgccuCGGCGCCGc -3'
miRNA:   3'- aCUGGCGccGGGGuu-AGu----GCCGCGGC- -5'
23717 5' -62 NC_005261.1 + 132447 0.66 0.650583
Target:  5'- aGAgCGCGuGCCCCucggcCGCccuccGCGCCGg -3'
miRNA:   3'- aCUgGCGC-CGGGGuua--GUGc----CGCGGC- -5'
23717 5' -62 NC_005261.1 + 59933 0.66 0.650583
Target:  5'- -cGCCGuCGGCCaucuCCAGccgcagCGCGGCGCgCGu -3'
miRNA:   3'- acUGGC-GCCGG----GGUUa-----GUGCCGCG-GC- -5'
23717 5' -62 NC_005261.1 + 74686 0.66 0.650583
Target:  5'- cGACCGCgcgggagcuGGCCgCCGcgCG-GGCGCgGa -3'
miRNA:   3'- aCUGGCG---------CCGG-GGUuaGUgCCGCGgC- -5'
23717 5' -62 NC_005261.1 + 75831 0.66 0.650583
Target:  5'- cGGCCGC-GCCCgGGgaggggcgCGCGGCGCn- -3'
miRNA:   3'- aCUGGCGcCGGGgUUa-------GUGCCGCGgc -5'
23717 5' -62 NC_005261.1 + 52990 0.66 0.649598
Target:  5'- aGGCggggGCGGCgCCCAGgcgucggcgcagcUCgccagcgcuuccGCGGCGCCGg -3'
miRNA:   3'- aCUGg---CGCCG-GGGUU-------------AG------------UGCCGCGGC- -5'
23717 5' -62 NC_005261.1 + 115594 0.66 0.649598
Target:  5'- cUGGCCGUacguGaGCCCCAgcgaggccagcacGUCGCGGCaGCg- -3'
miRNA:   3'- -ACUGGCG----C-CGGGGU-------------UAGUGCCG-CGgc -5'
23717 5' -62 NC_005261.1 + 134341 0.66 0.647628
Target:  5'- cUGuACCGCaaGCCCCcgcgccgccgcgcgGGggGCGGCGCCGc -3'
miRNA:   3'- -AC-UGGCGc-CGGGG--------------UUagUGCCGCGGC- -5'
23717 5' -62 NC_005261.1 + 57512 0.66 0.646643
Target:  5'- cGGCgGCGGgCCUucuuccacaggCACGGCGCgGc -3'
miRNA:   3'- aCUGgCGCCgGGGuua--------GUGCCGCGgC- -5'
23717 5' -62 NC_005261.1 + 102349 0.66 0.644672
Target:  5'- cGGCCGCGucgaaggcggagcgcGCCUCAAcgcgcuccagCGCGGCGCg- -3'
miRNA:   3'- aCUGGCGC---------------CGGGGUUa---------GUGCCGCGgc -5'
23717 5' -62 NC_005261.1 + 103683 0.66 0.643686
Target:  5'- aGGCCgagcgcccguuuauaGCGGCcacgucaCCCAG-CACGGCGUCu -3'
miRNA:   3'- aCUGG---------------CGCCG-------GGGUUaGUGCCGCGGc -5'
23717 5' -62 NC_005261.1 + 131141 0.66 0.640729
Target:  5'- cGACC-UGGUCUCuuUUGCGGCGCUc -3'
miRNA:   3'- aCUGGcGCCGGGGuuAGUGCCGCGGc -5'
23717 5' -62 NC_005261.1 + 68868 0.66 0.640729
Target:  5'- -uGCCGCGGCUgugcgCCGucgugcgcugCGCGGaCGCCGu -3'
miRNA:   3'- acUGGCGCCGG-----GGUua--------GUGCC-GCGGC- -5'
23717 5' -62 NC_005261.1 + 71231 0.66 0.640729
Target:  5'- -cGCaCGCGGCCCUcg--GCGGCGCa- -3'
miRNA:   3'- acUG-GCGCCGGGGuuagUGCCGCGgc -5'
23717 5' -62 NC_005261.1 + 28988 0.66 0.640729
Target:  5'- aUGACUcuGgGGCCgCCGAcUC-CGGgGCCGa -3'
miRNA:   3'- -ACUGG--CgCCGG-GGUU-AGuGCCgCGGC- -5'
23717 5' -62 NC_005261.1 + 90772 0.66 0.640729
Target:  5'- aGGCCGCcgaGGCCgCu---GCGGCgGCCGg -3'
miRNA:   3'- aCUGGCG---CCGGgGuuagUGCCG-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.