miRNA display CGI


Results 1 - 20 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23718 3' -58.2 NC_005261.1 + 14749 0.66 0.792881
Target:  5'- gGGgcGAuCGGCGCcGCGccgcgacagggggGCCGCCCc -3'
miRNA:   3'- -UCauCU-GCCGCGuCGUua-----------CGGCGGGu -5'
23718 3' -58.2 NC_005261.1 + 118854 0.66 0.789227
Target:  5'- cGGaGGGCGGCGC-GCcc-GCgGCCCu -3'
miRNA:   3'- -UCaUCUGCCGCGuCGuuaCGgCGGGu -5'
23718 3' -58.2 NC_005261.1 + 107288 0.66 0.789227
Target:  5'- --cAGGCGGCaggcacuccgccGCGGcCAcgGCCGCCg- -3'
miRNA:   3'- ucaUCUGCCG------------CGUC-GUuaCGGCGGgu -5'
23718 3' -58.2 NC_005261.1 + 75477 0.66 0.789227
Target:  5'- cGGgcGGCGGCGCGG----GCCGCUa- -3'
miRNA:   3'- -UCauCUGCCGCGUCguuaCGGCGGgu -5'
23718 3' -58.2 NC_005261.1 + 50191 0.66 0.789227
Target:  5'- cAGcAGcCGGUGCAGCAGcgcGUCGaCCCGg -3'
miRNA:   3'- -UCaUCuGCCGCGUCGUUa--CGGC-GGGU- -5'
23718 3' -58.2 NC_005261.1 + 19019 0.66 0.789227
Target:  5'- aGGUGGucagcgucGCGGgGCAGCcggagaGCCGCCa- -3'
miRNA:   3'- -UCAUC--------UGCCgCGUCGuua---CGGCGGgu -5'
23718 3' -58.2 NC_005261.1 + 101478 0.66 0.785551
Target:  5'- cGgcGGCGugauGCGCAGCAGguucuugagguugGCCaGCCCGg -3'
miRNA:   3'- uCauCUGC----CGCGUCGUUa------------CGG-CGGGU- -5'
23718 3' -58.2 NC_005261.1 + 99806 0.66 0.779995
Target:  5'- --cGGAUGGCGaaCAGCGc-GCCGUCCGc -3'
miRNA:   3'- ucaUCUGCCGC--GUCGUuaCGGCGGGU- -5'
23718 3' -58.2 NC_005261.1 + 4401 0.66 0.779995
Target:  5'- --cGGGCGGCgGCGGCGc-GCUGCCgGg -3'
miRNA:   3'- ucaUCUGCCG-CGUCGUuaCGGCGGgU- -5'
23718 3' -58.2 NC_005261.1 + 105373 0.66 0.779995
Target:  5'- --cAGGCGGCGCGcGCGgGUGCgCGCUg- -3'
miRNA:   3'- ucaUCUGCCGCGU-CGU-UACG-GCGGgu -5'
23718 3' -58.2 NC_005261.1 + 97965 0.66 0.779995
Target:  5'- aGGUGG-CGGCGgAGCGGUGCC-Cg-- -3'
miRNA:   3'- -UCAUCuGCCGCgUCGUUACGGcGggu -5'
23718 3' -58.2 NC_005261.1 + 12766 0.66 0.779995
Target:  5'- cGUAGGCGGCgGUGGCGGgggGCuCGUCg- -3'
miRNA:   3'- uCAUCUGCCG-CGUCGUUa--CG-GCGGgu -5'
23718 3' -58.2 NC_005261.1 + 58414 0.66 0.779995
Target:  5'- ---cGACGGUGCAcuGCA--GCCGCCgCGa -3'
miRNA:   3'- ucauCUGCCGCGU--CGUuaCGGCGG-GU- -5'
23718 3' -58.2 NC_005261.1 + 55231 0.66 0.779995
Target:  5'- cGgcGAgGGCgGCAGCAccgcaGCCGCCgCGa -3'
miRNA:   3'- uCauCUgCCG-CGUCGUua---CGGCGG-GU- -5'
23718 3' -58.2 NC_005261.1 + 37340 0.66 0.779064
Target:  5'- uGGcAGGCaucuuuauccgcgGGCGguGCuc-GCCGCCCGa -3'
miRNA:   3'- -UCaUCUG-------------CCGCguCGuuaCGGCGGGU- -5'
23718 3' -58.2 NC_005261.1 + 58235 0.66 0.779064
Target:  5'- ---cGGCGGCGggguccuCGGCcAUGCCGCgCCGc -3'
miRNA:   3'- ucauCUGCCGC-------GUCGuUACGGCG-GGU- -5'
23718 3' -58.2 NC_005261.1 + 14853 0.66 0.770628
Target:  5'- cAGgcGGCGGCGCAucgcGCAGU-UCGCCa- -3'
miRNA:   3'- -UCauCUGCCGCGU----CGUUAcGGCGGgu -5'
23718 3' -58.2 NC_005261.1 + 132908 0.66 0.770628
Target:  5'- --cGGGCGGCGCcgAGCGGcgGCUccuGCCCu -3'
miRNA:   3'- ucaUCUGCCGCG--UCGUUa-CGG---CGGGu -5'
23718 3' -58.2 NC_005261.1 + 30328 0.66 0.770628
Target:  5'- aAGU-GcCGGCGCGGCuggcgGCCGCgCu -3'
miRNA:   3'- -UCAuCuGCCGCGUCGuua--CGGCGgGu -5'
23718 3' -58.2 NC_005261.1 + 52975 0.66 0.770628
Target:  5'- cGGU--GCGGCGcCGGCAGgcggggGCggCGCCCAg -3'
miRNA:   3'- -UCAucUGCCGC-GUCGUUa-----CG--GCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.