miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23718 5' -58.8 NC_005261.1 + 46817 0.66 0.751531
Target:  5'- --cGGauGGCGCGCgccagGC-GCGCGUGc -3'
miRNA:   3'- aaaCCgcCUGCGCGa----CGaCGCGCAUc -5'
23718 5' -58.8 NC_005261.1 + 56118 0.66 0.751531
Target:  5'- --cGGCGGgaGCGCGCcgcaggGCgggggGCGCGg-- -3'
miRNA:   3'- aaaCCGCC--UGCGCGa-----CGa----CGCGCauc -5'
23718 5' -58.8 NC_005261.1 + 133622 0.66 0.751531
Target:  5'- -cUGGCgcuguGGGcCGCGCUcgccgcgccGCUGCGCGa-- -3'
miRNA:   3'- aaACCG-----CCU-GCGCGA---------CGACGCGCauc -5'
23718 5' -58.8 NC_005261.1 + 113464 0.66 0.751531
Target:  5'- -aUGaGCGG-CGaGCUGCUGCGCc--- -3'
miRNA:   3'- aaAC-CGCCuGCgCGACGACGCGcauc -5'
23718 5' -58.8 NC_005261.1 + 118682 0.66 0.751531
Target:  5'- --cGGCGGGCGCugGCgcacGC-GCgGCGUGGu -3'
miRNA:   3'- aaaCCGCCUGCG--CGa---CGaCG-CGCAUC- -5'
23718 5' -58.8 NC_005261.1 + 98378 0.66 0.750565
Target:  5'- -cUGGCGGGCGCaauaccgGCguggggGCggGCGCGg-- -3'
miRNA:   3'- aaACCGCCUGCG-------CGa-----CGa-CGCGCauc -5'
23718 5' -58.8 NC_005261.1 + 116490 0.66 0.749597
Target:  5'- --gGGCGGGCGCGCgguauaaagaGCgccgccgcggcgGCGCG-AGg -3'
miRNA:   3'- aaaCCGCCUGCGCGa---------CGa-----------CGCGCaUC- -5'
23718 5' -58.8 NC_005261.1 + 59796 0.66 0.74182
Target:  5'- --cGGCGGGCggcaggccgGCGUggcGCcGCGUGUAGu -3'
miRNA:   3'- aaaCCGCCUG---------CGCGa--CGaCGCGCAUC- -5'
23718 5' -58.8 NC_005261.1 + 41116 0.66 0.74182
Target:  5'- --cGGCGGGCccgaGCGCUucCUGCGUGgcGc -3'
miRNA:   3'- aaaCCGCCUG----CGCGAc-GACGCGCauC- -5'
23718 5' -58.8 NC_005261.1 + 379 0.66 0.74182
Target:  5'- --cGGCGGugGCgGCgGCgGCgGCGgcGg -3'
miRNA:   3'- aaaCCGCCugCG-CGaCGaCG-CGCauC- -5'
23718 5' -58.8 NC_005261.1 + 118097 0.66 0.74182
Target:  5'- -cUGGCGGcccgcCGCGCagacGCUGCGCc--- -3'
miRNA:   3'- aaACCGCCu----GCGCGa---CGACGCGcauc -5'
23718 5' -58.8 NC_005261.1 + 127348 0.66 0.74182
Target:  5'- --cGGCGGG-GCGCUGggccCGCGUGGc -3'
miRNA:   3'- aaaCCGCCUgCGCGACgac-GCGCAUC- -5'
23718 5' -58.8 NC_005261.1 + 107257 0.66 0.74182
Target:  5'- ---cGCGGGCGCGCgggcacggGCggGCGCGc-- -3'
miRNA:   3'- aaacCGCCUGCGCGa-------CGa-CGCGCauc -5'
23718 5' -58.8 NC_005261.1 + 138050 0.66 0.74182
Target:  5'- --cGGCGGugGCgGCgGCgGCgGCGgcGg -3'
miRNA:   3'- aaaCCGCCugCG-CGaCGaCG-CGCauC- -5'
23718 5' -58.8 NC_005261.1 + 71964 0.66 0.74182
Target:  5'- --cGGCgcgGGGCGCGgaGC-GCGCGg-- -3'
miRNA:   3'- aaaCCG---CCUGCGCgaCGaCGCGCauc -5'
23718 5' -58.8 NC_005261.1 + 74055 0.66 0.732011
Target:  5'- --cGGgGGGCuGCgGCaGCUGCGCGa-- -3'
miRNA:   3'- aaaCCgCCUG-CG-CGaCGACGCGCauc -5'
23718 5' -58.8 NC_005261.1 + 37876 0.66 0.732011
Target:  5'- -cUGGCGGcGCGUGCUGgaGCcCGa-- -3'
miRNA:   3'- aaACCGCC-UGCGCGACgaCGcGCauc -5'
23718 5' -58.8 NC_005261.1 + 63047 0.66 0.732011
Target:  5'- --aGGCGGuCGCGCaGCaGCGCc--- -3'
miRNA:   3'- aaaCCGCCuGCGCGaCGaCGCGcauc -5'
23718 5' -58.8 NC_005261.1 + 1696 0.66 0.732011
Target:  5'- --cGGCaGcACGCGCUGCcgguacucGCGCGgcGg -3'
miRNA:   3'- aaaCCGcC-UGCGCGACGa-------CGCGCauC- -5'
23718 5' -58.8 NC_005261.1 + 85940 0.66 0.732011
Target:  5'- -aUGGCGGccaggGCGcCGCggaaGCUG-GCGUGGu -3'
miRNA:   3'- aaACCGCC-----UGC-GCGa---CGACgCGCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.