miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 4155 0.66 0.795607
Target:  5'- gCAGcAGGCGCgCCaGCUGCAgGuccgggcccGCGAGCu -3'
miRNA:   3'- -GUC-UCCGCG-GGcCGAUGUgC---------CGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 70687 0.66 0.795607
Target:  5'- cCAGccAGGCguccagcgcgGCCCGcGCggGCACGGCcgaGAGCa -3'
miRNA:   3'- -GUC--UCCG----------CGGGC-CGa-UGUGCCG---UUUG- -5'
23719 3' -58.2 NC_005261.1 + 2744 0.66 0.795607
Target:  5'- ----uGCGCCgCGGCgggccguCGCGGCGGGCc -3'
miRNA:   3'- gucucCGCGG-GCCGau-----GUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 138012 0.66 0.795607
Target:  5'- gCGGcGGCccgcaGCCCGGCgcgGCccgGCGGCGguGGCg -3'
miRNA:   3'- -GUCuCCG-----CGGGCCGa--UG---UGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 135082 0.66 0.795607
Target:  5'- gCGGcGGGCucgcgGCCCGGCggcggaGCGCgaGGCGGACc -3'
miRNA:   3'- -GUC-UCCG-----CGGGCCGa-----UGUG--CCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 138126 0.66 0.795607
Target:  5'- aCGGGGGcCGCgacggCCGGCgggaugGCGCGGgGAGg -3'
miRNA:   3'- -GUCUCC-GCG-----GGCCGa-----UGUGCCgUUUg -5'
23719 3' -58.2 NC_005261.1 + 455 0.66 0.795607
Target:  5'- aCGGGGGcCGCgacggCCGGCgggaugGCGCGGgGAGg -3'
miRNA:   3'- -GUCUCC-GCG-----GGCCGa-----UGUGCCgUUUg -5'
23719 3' -58.2 NC_005261.1 + 108293 0.66 0.795607
Target:  5'- -cGuuGCGCUCGcCUGCACGGCGucccaGACg -3'
miRNA:   3'- guCucCGCGGGCcGAUGUGCCGU-----UUG- -5'
23719 3' -58.2 NC_005261.1 + 341 0.66 0.795607
Target:  5'- gCGGcGGCccgcaGCCCGGCgcgGCccgGCGGCGguGGCg -3'
miRNA:   3'- -GUCuCCG-----CGGGCCGa--UG---UGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 83503 0.66 0.795607
Target:  5'- cCAGGcGcGCGCgCCGGUggaaGCGGCAcGCg -3'
miRNA:   3'- -GUCU-C-CGCG-GGCCGaug-UGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 88341 0.66 0.795607
Target:  5'- uGGcGGCGCCCcGCcgcCGCGGCGuuCa -3'
miRNA:   3'- gUCuCCGCGGGcCGau-GUGCCGUuuG- -5'
23719 3' -58.2 NC_005261.1 + 29200 0.66 0.79289
Target:  5'- ---cGGCGCCCGcGCggGCGCGcgacuggggcccgcGCAGGCu -3'
miRNA:   3'- gucuCCGCGGGC-CGa-UGUGC--------------CGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 87361 0.66 0.786499
Target:  5'- uCGGGGcuaGCGCCCa-CcGCGCGGCAGAUg -3'
miRNA:   3'- -GUCUC---CGCGGGccGaUGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 101884 0.66 0.786499
Target:  5'- gCAG-GGCGCCCaGCcGCGCGcGCu--- -3'
miRNA:   3'- -GUCuCCGCGGGcCGaUGUGC-CGuuug -5'
23719 3' -58.2 NC_005261.1 + 39794 0.66 0.786499
Target:  5'- gGGGGGCGgCgCGGCcGC-CGGCGccaGGCu -3'
miRNA:   3'- gUCUCCGCgG-GCCGaUGuGCCGU---UUG- -5'
23719 3' -58.2 NC_005261.1 + 109210 0.66 0.786499
Target:  5'- --cAGGCGCUCGuagGCGCGGCAcGCc -3'
miRNA:   3'- gucUCCGCGGGCcgaUGUGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 98009 0.66 0.786499
Target:  5'- gCGGGGGCGCUggCGGCgagGCuggagacgccGCGGUAcuGGCg -3'
miRNA:   3'- -GUCUCCGCGG--GCCGa--UG----------UGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 105948 0.66 0.786499
Target:  5'- -cGAGcGCGCCgucgauggccuCGGCgcccaGCGCGGCGucGACg -3'
miRNA:   3'- guCUC-CGCGG-----------GCCGa----UGUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 13602 0.66 0.786499
Target:  5'- aGGAGuCGCCCGGggugUACACGuGgGAGCg -3'
miRNA:   3'- gUCUCcGCGGGCCg---AUGUGC-CgUUUG- -5'
23719 3' -58.2 NC_005261.1 + 31921 0.66 0.786499
Target:  5'- -cGGGGCGCCgccgcugGGCUcugcCGCGGCGccAACg -3'
miRNA:   3'- guCUCCGCGGg------CCGAu---GUGCCGU--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.