miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 90062 0.66 0.758376
Target:  5'- cCAGcGGCGCCCcGCggGCGCcgagGGCAgcGACg -3'
miRNA:   3'- -GUCuCCGCGGGcCGa-UGUG----CCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 91138 0.66 0.758376
Target:  5'- -cGAGGCcucagccgugccGCCCGGCgagugGCccggGCGGCAGc- -3'
miRNA:   3'- guCUCCG------------CGGGCCGa----UG----UGCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 77658 0.66 0.758376
Target:  5'- aCGGccGGCGCCUgcaGGCgcaggGCGCGGaCGGGCc -3'
miRNA:   3'- -GUCu-CCGCGGG---CCGa----UGUGCC-GUUUG- -5'
23719 3' -58.2 NC_005261.1 + 44275 0.66 0.758376
Target:  5'- gGGGGGCgggGCCCGccGCca-GCGGCGGGCc -3'
miRNA:   3'- gUCUCCG---CGGGC--CGaugUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 34329 0.66 0.767874
Target:  5'- -cGAGGgGCCCcaaggGGCcgGgGCGGCcGACg -3'
miRNA:   3'- guCUCCgCGGG-----CCGa-UgUGCCGuUUG- -5'
23719 3' -58.2 NC_005261.1 + 52995 0.66 0.758376
Target:  5'- gGGGcGGCGCCCaGGCgu--CGGCGcAGCu -3'
miRNA:   3'- gUCU-CCGCGGG-CCGauguGCCGU-UUG- -5'
23719 3' -58.2 NC_005261.1 + 102782 0.66 0.758376
Target:  5'- -cGAGGCcucgcCCCGGCcgcgaGCGCGGCGc-- -3'
miRNA:   3'- guCUCCGc----GGGCCGa----UGUGCCGUuug -5'
23719 3' -58.2 NC_005261.1 + 105109 0.66 0.758376
Target:  5'- gCGGGGGCuuGCCCGcGCggGCGCGGg---- -3'
miRNA:   3'- -GUCUCCG--CGGGC-CGa-UGUGCCguuug -5'
23719 3' -58.2 NC_005261.1 + 132597 0.66 0.758376
Target:  5'- ---cGGaCGCCCGGCc---CGGCGAGCc -3'
miRNA:   3'- gucuCC-GCGGGCCGauguGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 69004 0.66 0.758376
Target:  5'- --cGGGCGCCgCGGCUuCGuuggcgaguccgUGGCGGACu -3'
miRNA:   3'- gucUCCGCGG-GCCGAuGU------------GCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 28716 0.66 0.767874
Target:  5'- -cGGGGgGCCCGGggGCcuCGGCGc-- -3'
miRNA:   3'- guCUCCgCGGGCCgaUGu-GCCGUuug -5'
23719 3' -58.2 NC_005261.1 + 117400 0.66 0.758376
Target:  5'- -cGGGGCGCCCGaCUuu-CGGCugGAGCu -3'
miRNA:   3'- guCUCCGCGGGCcGAuguGCCG--UUUG- -5'
23719 3' -58.2 NC_005261.1 + 91685 0.66 0.755504
Target:  5'- cCGGAGacgacGCGCgccugcgacagCCGGCUGCaaggccggcucgccGCGGCGGGCu -3'
miRNA:   3'- -GUCUC-----CGCG-----------GGCCGAUG--------------UGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 59473 0.66 0.76693
Target:  5'- gGGGGGCaGCgCCGGCgcgGCcgccgcgccagcgGCGGCGGucGCa -3'
miRNA:   3'- gUCUCCG-CG-GGCCGa--UG-------------UGCCGUU--UG- -5'
23719 3' -58.2 NC_005261.1 + 6063 0.66 0.767874
Target:  5'- aAGGGGC-CCCucgucccgacGGCg--GCGGCAAGCa -3'
miRNA:   3'- gUCUCCGcGGG----------CCGaugUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 93679 0.66 0.758376
Target:  5'- gCGGcGGCG-CCGGCgggGCGcCGGCGggUg -3'
miRNA:   3'- -GUCuCCGCgGGCCGa--UGU-GCCGUuuG- -5'
23719 3' -58.2 NC_005261.1 + 1868 0.66 0.767874
Target:  5'- aAGAcGCGCCgcgaGGCcaGCACGGCGcGCg -3'
miRNA:   3'- gUCUcCGCGGg---CCGa-UGUGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 118523 0.66 0.758376
Target:  5'- -cGAGGCGCCCuGCcccgccgACcccuGCGGCGcGCg -3'
miRNA:   3'- guCUCCGCGGGcCGa------UG----UGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 38275 0.66 0.758376
Target:  5'- uGGGGGCGgCUGGUgcACGCGGUgcuggcccgccuGAGCg -3'
miRNA:   3'- gUCUCCGCgGGCCGa-UGUGCCG------------UUUG- -5'
23719 3' -58.2 NC_005261.1 + 15368 0.66 0.758376
Target:  5'- cCGGcGGCGCUCGGCgcccuCGGCGc-- -3'
miRNA:   3'- -GUCuCCGCGGGCCGaugu-GCCGUuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.