miRNA display CGI


Results 21 - 40 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 15368 0.66 0.758376
Target:  5'- cCGGcGGCGCUCGGCgcccuCGGCGc-- -3'
miRNA:   3'- -GUCuCCGCGGGCCGaugu-GCCGUuug -5'
23719 3' -58.2 NC_005261.1 + 73367 0.66 0.78558
Target:  5'- uCAGGcGGCGCCagcagcgCGGCcACGCGcGCGuGCa -3'
miRNA:   3'- -GUCU-CCGCGG-------GCCGaUGUGC-CGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 105109 0.66 0.758376
Target:  5'- gCGGGGGCuuGCCCGcGCggGCGCGGg---- -3'
miRNA:   3'- -GUCUCCG--CGGGC-CGa-UGUGCCguuug -5'
23719 3' -58.2 NC_005261.1 + 28538 0.66 0.777251
Target:  5'- cCGGAGGagGaCCCGGCccugcucgACGCGGCccGCc -3'
miRNA:   3'- -GUCUCCg-C-GGGCCGa-------UGUGCCGuuUG- -5'
23719 3' -58.2 NC_005261.1 + 6063 0.66 0.767874
Target:  5'- aAGGGGC-CCCucgucccgacGGCg--GCGGCAAGCa -3'
miRNA:   3'- gUCUCCGcGGG----------CCGaugUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 38275 0.66 0.758376
Target:  5'- uGGGGGCGgCUGGUgcACGCGGUgcuggcccgccuGAGCg -3'
miRNA:   3'- gUCUCCGCgGGCCGa-UGUGCCG------------UUUG- -5'
23719 3' -58.2 NC_005261.1 + 59473 0.66 0.76693
Target:  5'- gGGGGGCaGCgCCGGCgcgGCcgccgcgccagcgGCGGCGGucGCa -3'
miRNA:   3'- gUCUCCG-CG-GGCCGa--UG-------------UGCCGUU--UG- -5'
23719 3' -58.2 NC_005261.1 + 52995 0.66 0.758376
Target:  5'- gGGGcGGCGCCCaGGCgu--CGGCGcAGCu -3'
miRNA:   3'- gUCU-CCGCGGG-CCGauguGCCGU-UUG- -5'
23719 3' -58.2 NC_005261.1 + 75072 0.66 0.767874
Target:  5'- ----cGCGCgCCGGCggggGCuCGGCGGGCa -3'
miRNA:   3'- gucucCGCG-GGCCGa---UGuGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 77240 0.66 0.77632
Target:  5'- cCAGAGcGCaGCCgGGCUcaaaaggGCGCGcucGCGGGCg -3'
miRNA:   3'- -GUCUC-CG-CGGgCCGA-------UGUGC---CGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 102782 0.66 0.758376
Target:  5'- -cGAGGCcucgcCCCGGCcgcgaGCGCGGCGc-- -3'
miRNA:   3'- guCUCCGc----GGGCCGa----UGUGCCGUuug -5'
23719 3' -58.2 NC_005261.1 + 14994 0.66 0.777251
Target:  5'- cCGGccGCGCCCGGa-GCGCGGgAGGa -3'
miRNA:   3'- -GUCucCGCGGGCCgaUGUGCCgUUUg -5'
23719 3' -58.2 NC_005261.1 + 18684 0.66 0.786499
Target:  5'- aAGGGGC-CCCaGGCUguuGCGGCGcACg -3'
miRNA:   3'- gUCUCCGcGGG-CCGAug-UGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 135452 0.66 0.777251
Target:  5'- gCGGcgcGGGCGCUgCGGgaccucguaCUGCGCGGCGAGa -3'
miRNA:   3'- -GUC---UCCGCGG-GCC---------GAUGUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 122614 0.66 0.767874
Target:  5'- -uGucGUGCCUGuGCUugAaCGGCGAGCg -3'
miRNA:   3'- guCucCGCGGGC-CGAugU-GCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 4511 0.66 0.777251
Target:  5'- cCAGucGcGCGCCCGcGCgggcgcCGCGGCGAGg -3'
miRNA:   3'- -GUCu-C-CGCGGGC-CGau----GUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 132597 0.66 0.758376
Target:  5'- ---cGGaCGCCCGGCc---CGGCGAGCc -3'
miRNA:   3'- gucuCC-GCGGGCCGauguGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 17732 0.66 0.777251
Target:  5'- uCGGAgcGGCGCUCGGa-GCG-GGCGGACu -3'
miRNA:   3'- -GUCU--CCGCGGGCCgaUGUgCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 107379 0.66 0.777251
Target:  5'- -cGGGGCGCCCGcGUccacgaACGGCcaGAGCc -3'
miRNA:   3'- guCUCCGCGGGC-CGaug---UGCCG--UUUG- -5'
23719 3' -58.2 NC_005261.1 + 77658 0.66 0.758376
Target:  5'- aCGGccGGCGCCUgcaGGCgcaggGCGCGGaCGGGCc -3'
miRNA:   3'- -GUCu-CCGCGGG---CCGa----UGUGCC-GUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.