miRNA display CGI


Results 41 - 60 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 59473 0.66 0.76693
Target:  5'- gGGGGGCaGCgCCGGCgcgGCcgccgcgccagcgGCGGCGGucGCa -3'
miRNA:   3'- gUCUCCG-CG-GGCCGa--UG-------------UGCCGUU--UG- -5'
23719 3' -58.2 NC_005261.1 + 2744 0.66 0.795607
Target:  5'- ----uGCGCCgCGGCgggccguCGCGGCGGGCc -3'
miRNA:   3'- gucucCGCGG-GCCGau-----GUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 39794 0.66 0.786499
Target:  5'- gGGGGGCGgCgCGGCcGC-CGGCGccaGGCu -3'
miRNA:   3'- gUCUCCGCgG-GCCGaUGuGCCGU---UUG- -5'
23719 3' -58.2 NC_005261.1 + 70687 0.66 0.795607
Target:  5'- cCAGccAGGCguccagcgcgGCCCGcGCggGCACGGCcgaGAGCa -3'
miRNA:   3'- -GUC--UCCG----------CGGGC-CGa-UGUGCCG---UUUG- -5'
23719 3' -58.2 NC_005261.1 + 17732 0.66 0.777251
Target:  5'- uCGGAgcGGCGCUCGGa-GCG-GGCGGACu -3'
miRNA:   3'- -GUCU--CCGCGGGCCgaUGUgCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 29200 0.66 0.79289
Target:  5'- ---cGGCGCCCGcGCggGCGCGcgacuggggcccgcGCAGGCu -3'
miRNA:   3'- gucuCCGCGGGC-CGa-UGUGC--------------CGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 75072 0.66 0.767874
Target:  5'- ----cGCGCgCCGGCggggGCuCGGCGGGCa -3'
miRNA:   3'- gucucCGCG-GGCCGa---UGuGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 102782 0.66 0.758376
Target:  5'- -cGAGGCcucgcCCCGGCcgcgaGCGCGGCGc-- -3'
miRNA:   3'- guCUCCGc----GGGCCGa----UGUGCCGUuug -5'
23719 3' -58.2 NC_005261.1 + 12075 0.66 0.777251
Target:  5'- gCAGcGGCGUCCgcgccggggcGGCUcaaagGCGCGGCGccAGCu -3'
miRNA:   3'- -GUCuCCGCGGG----------CCGA-----UGUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 110454 0.66 0.767874
Target:  5'- --cGGGCGUuuGGgUGcCugGGCGGGCu -3'
miRNA:   3'- gucUCCGCGggCCgAU-GugCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 91138 0.66 0.758376
Target:  5'- -cGAGGCcucagccgugccGCCCGGCgagugGCccggGCGGCAGc- -3'
miRNA:   3'- guCUCCG------------CGGGCCGa----UG----UGCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 34329 0.66 0.767874
Target:  5'- -cGAGGgGCCCcaaggGGCcgGgGCGGCcGACg -3'
miRNA:   3'- guCUCCgCGGG-----CCGa-UgUGCCGuUUG- -5'
23719 3' -58.2 NC_005261.1 + 77658 0.66 0.758376
Target:  5'- aCGGccGGCGCCUgcaGGCgcaggGCGCGGaCGGGCc -3'
miRNA:   3'- -GUCu-CCGCGGG---CCGa----UGUGCC-GUUUG- -5'
23719 3' -58.2 NC_005261.1 + 4511 0.66 0.777251
Target:  5'- cCAGucGcGCGCCCGcGCgggcgcCGCGGCGAGg -3'
miRNA:   3'- -GUCu-C-CGCGGGC-CGau----GUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 91685 0.66 0.755504
Target:  5'- cCGGAGacgacGCGCgccugcgacagCCGGCUGCaaggccggcucgccGCGGCGGGCu -3'
miRNA:   3'- -GUCUC-----CGCG-----------GGCCGAUG--------------UGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 132597 0.66 0.758376
Target:  5'- ---cGGaCGCCCGGCc---CGGCGAGCc -3'
miRNA:   3'- gucuCC-GCGGGCCGauguGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 93679 0.66 0.758376
Target:  5'- gCGGcGGCG-CCGGCgggGCGcCGGCGggUg -3'
miRNA:   3'- -GUCuCCGCgGGCCGa--UGU-GCCGUuuG- -5'
23719 3' -58.2 NC_005261.1 + 52995 0.66 0.758376
Target:  5'- gGGGcGGCGCCCaGGCgu--CGGCGcAGCu -3'
miRNA:   3'- gUCU-CCGCGGG-CCGauguGCCGU-UUG- -5'
23719 3' -58.2 NC_005261.1 + 69250 0.66 0.777251
Target:  5'- -cGAGGCgcugGCCCGcGCcgACccCGGCGAGCc -3'
miRNA:   3'- guCUCCG----CGGGC-CGa-UGu-GCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 105948 0.66 0.786499
Target:  5'- -cGAGcGCGCCgucgauggccuCGGCgcccaGCGCGGCGucGACg -3'
miRNA:   3'- guCUC-CGCGG-----------GCCGa----UGUGCCGU--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.