miRNA display CGI


Results 61 - 80 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 519 0.67 0.719357
Target:  5'- gGGAgGGCGCgggCgGGCgggggGCAgGGCGGACg -3'
miRNA:   3'- gUCU-CCGCG---GgCCGa----UGUgCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 60226 0.67 0.738077
Target:  5'- -cGGGGCGCCCccagGGCcGCcuccgccGCGGCGggAGCg -3'
miRNA:   3'- guCUCCGCGGG----CCGaUG-------UGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 67666 0.67 0.699362
Target:  5'- ----cGCGCgCGGCgccagGCGCGGUGAGCg -3'
miRNA:   3'- gucucCGCGgGCCGa----UGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 24901 0.67 0.703381
Target:  5'- cCGGcGGGCGCCCcuucaagcccucggcGGCUGCagccgccgaGgGGCAGGCu -3'
miRNA:   3'- -GUC-UCCGCGGG---------------CCGAUG---------UgCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 130639 0.67 0.703381
Target:  5'- -cGGGGCGCgCGugcgcucgccgacgcGCUGCuccuCGGCGAGCc -3'
miRNA:   3'- guCUCCGCGgGC---------------CGAUGu---GCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 132622 0.67 0.71538
Target:  5'- aGGGGGCG-CUGGCgccgaggacgcggGCGCGGCGGc- -3'
miRNA:   3'- gUCUCCGCgGGCCGa------------UGUGCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 59438 0.67 0.709392
Target:  5'- cCGGcAGGCG-CCGGCagcaGCGCGGCcgcGGCg -3'
miRNA:   3'- -GUC-UCCGCgGGCCGa---UGUGCCGu--UUG- -5'
23719 3' -58.2 NC_005261.1 + 129743 0.67 0.709392
Target:  5'- gCGGcGGgGCCCGGCcuucaGCAcCGGCGAc- -3'
miRNA:   3'- -GUCuCCgCGGGCCGa----UGU-GCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 121478 0.67 0.748766
Target:  5'- ---cGGCGUaCCGGCUGCcgccacgggGCGGCGGGg -3'
miRNA:   3'- gucuCCGCG-GGCCGAUG---------UGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 16292 0.67 0.729247
Target:  5'- gGGGGGCGCCgucgGGCccaGCGGCGGc- -3'
miRNA:   3'- gUCUCCGCGGg---CCGaugUGCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 75145 0.67 0.739053
Target:  5'- -cGA-GCGCCCccuGGCgacGCGCGGCAugGACu -3'
miRNA:   3'- guCUcCGCGGG---CCGa--UGUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 62086 0.67 0.739053
Target:  5'- -cGAGGCgcuGCCCaGCUGCACgauGGCGuuGGCc -3'
miRNA:   3'- guCUCCG---CGGGcCGAUGUG---CCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 38949 0.67 0.748766
Target:  5'- gCGGGccgcGGCGCgCgGGCUGCGCaGCAAc- -3'
miRNA:   3'- -GUCU----CCGCG-GgCCGAUGUGcCGUUug -5'
23719 3' -58.2 NC_005261.1 + 131838 0.67 0.739053
Target:  5'- ---cGGCGCCCGccuGCUGCGgGGUguccAAGCg -3'
miRNA:   3'- gucuCCGCGGGC---CGAUGUgCCG----UUUG- -5'
23719 3' -58.2 NC_005261.1 + 22121 0.67 0.748766
Target:  5'- gAGAGuGCGUgCGG-UAUACGGCGGGg -3'
miRNA:   3'- gUCUC-CGCGgGCCgAUGUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 69302 0.67 0.729247
Target:  5'- -cGGGGCGCCgguggCGGCgggaGCGgGGguGACg -3'
miRNA:   3'- guCUCCGCGG-----GCCGa---UGUgCCguUUG- -5'
23719 3' -58.2 NC_005261.1 + 46502 0.67 0.748766
Target:  5'- gCGGGGcGCaGCCCGGCgucGCGCaGCAc-- -3'
miRNA:   3'- -GUCUC-CG-CGGGCCGa--UGUGcCGUuug -5'
23719 3' -58.2 NC_005261.1 + 33755 0.67 0.719357
Target:  5'- -cGGGGCcggGCCCGcucGCggggccCGCGGCGAGCg -3'
miRNA:   3'- guCUCCG---CGGGC---CGau----GUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 54483 0.67 0.729247
Target:  5'- --cGGGCGUCgGGCgGCAgGcGCAAACg -3'
miRNA:   3'- gucUCCGCGGgCCGaUGUgC-CGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 29905 0.67 0.729247
Target:  5'- gCGGcAGcGCGCgagCGGCUGCGCgagcuGGCGGACg -3'
miRNA:   3'- -GUC-UC-CGCGg--GCCGAUGUG-----CCGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.