miRNA display CGI


Results 81 - 100 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 67666 0.67 0.699362
Target:  5'- ----cGCGCgCGGCgccagGCGCGGUGAGCg -3'
miRNA:   3'- gucucCGCGgGCCGa----UGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 2686 0.67 0.699362
Target:  5'- cCGGcGGCGCgCCGGCUuu-UGGCcGGCg -3'
miRNA:   3'- -GUCuCCGCG-GGCCGAuguGCCGuUUG- -5'
23719 3' -58.2 NC_005261.1 + 49684 0.67 0.699362
Target:  5'- -cGGGGCcgugGCCCaugGGCUugACguaGGCGAACa -3'
miRNA:   3'- guCUCCG----CGGG---CCGAugUG---CCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 35228 0.67 0.699362
Target:  5'- uGGAGGgGaCCCGGCaggaggagAgGCGGCGGGa -3'
miRNA:   3'- gUCUCCgC-GGGCCGa-------UgUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 100264 0.67 0.698355
Target:  5'- cCAGucGGCGCgCCGGUgGCgcacgaaGCGGCAGAa -3'
miRNA:   3'- -GUCu-CCGCG-GGCCGaUG-------UGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 129743 0.67 0.709392
Target:  5'- gCGGcGGgGCCCGGCcuucaGCAcCGGCGAc- -3'
miRNA:   3'- -GUCuCCgCGGGCCGa----UGU-GCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 59438 0.67 0.709392
Target:  5'- cCGGcAGGCG-CCGGCagcaGCGCGGCcgcGGCg -3'
miRNA:   3'- -GUC-UCCGCgGGCCGa---UGUGCCGu--UUG- -5'
23719 3' -58.2 NC_005261.1 + 132622 0.67 0.71538
Target:  5'- aGGGGGCG-CUGGCgccgaggacgcggGCGCGGCGGc- -3'
miRNA:   3'- gUCUCCGCgGGCCGa------------UGUGCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 13112 0.67 0.729247
Target:  5'- uCGGGGGCGUCggCGGCcGCGgGGCGc-- -3'
miRNA:   3'- -GUCUCCGCGG--GCCGaUGUgCCGUuug -5'
23719 3' -58.2 NC_005261.1 + 2811 0.67 0.729247
Target:  5'- gAGGGGCcgggcggccccaGCCCGaGCUcGgGCGGCAGGg -3'
miRNA:   3'- gUCUCCG------------CGGGC-CGA-UgUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 133031 0.67 0.729247
Target:  5'- -cGGGcGCGCCaccgcgcacgcaCGuGCUGCGCGGCGuuGGCg -3'
miRNA:   3'- guCUC-CGCGG------------GC-CGAUGUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 29905 0.67 0.729247
Target:  5'- gCGGcAGcGCGCgagCGGCUGCGCgagcuGGCGGACg -3'
miRNA:   3'- -GUC-UC-CGCGg--GCCGAUGUG-----CCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 16292 0.67 0.729247
Target:  5'- gGGGGGCGCCgucgGGCccaGCGGCGGc- -3'
miRNA:   3'- gUCUCCGCGGg---CCGaugUGCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 33755 0.67 0.719357
Target:  5'- -cGGGGCcggGCCCGcucGCggggccCGCGGCGAGCg -3'
miRNA:   3'- guCUCCG---CGGGC---CGau----GUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 138190 0.67 0.719357
Target:  5'- gGGAgGGCGCgggCgGGCgggggGCAgGGCGGACg -3'
miRNA:   3'- gUCU-CCGCG---GgCCGa----UGUgCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 81227 0.67 0.719357
Target:  5'- -cGuGGCGCCCGa--GgGCGGCGGGCa -3'
miRNA:   3'- guCuCCGCGGGCcgaUgUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 519 0.67 0.719357
Target:  5'- gGGAgGGCGCgggCgGGCgggggGCAgGGCGGACg -3'
miRNA:   3'- gUCU-CCGCG---GgCCGa----UGUgCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 62554 0.68 0.655697
Target:  5'- gAGAGGCGCcgccagcaugcgccCCGGCgcCACGcGCAGc- -3'
miRNA:   3'- gUCUCCGCG--------------GGCCGauGUGC-CGUUug -5'
23719 3' -58.2 NC_005261.1 + 52958 0.68 0.648538
Target:  5'- uCGGAGcaGCGCcgcgCCGGUgcgGCGcCGGCAGGCg -3'
miRNA:   3'- -GUCUC--CGCG----GGCCGa--UGU-GCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 14829 0.68 0.648538
Target:  5'- aUAGAuGCGCCgGGa-GCACGGCAGcagGCg -3'
miRNA:   3'- -GUCUcCGCGGgCCgaUGUGCCGUU---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.