miRNA display CGI


Results 61 - 80 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 121806 0.71 0.463655
Target:  5'- aGGGGGCGCgUGGCUGggcucugcgggccgcCGCGGCGGcGCa -3'
miRNA:   3'- gUCUCCGCGgGCCGAU---------------GUGCCGUU-UG- -5'
23719 3' -58.2 NC_005261.1 + 99777 0.71 0.466451
Target:  5'- gAGAGGCgGCCCGGgUcccagucgcggcgcGgAUGGCGAACa -3'
miRNA:   3'- gUCUCCG-CGGGCCgA--------------UgUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 33831 0.71 0.468319
Target:  5'- gGGGGGCGCgggccccCUGGC-GCugGGCGGGCc -3'
miRNA:   3'- gUCUCCGCG-------GGCCGaUGugCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 84254 0.71 0.469255
Target:  5'- -cGGGGCGCuuGGCccccgGCAUGGCGc-- -3'
miRNA:   3'- guCUCCGCGggCCGa----UGUGCCGUuug -5'
23719 3' -58.2 NC_005261.1 + 95761 0.71 0.469255
Target:  5'- cCGGGGGCGCCgggagccucgCGcGCUGCGcCGGCGcGCu -3'
miRNA:   3'- -GUCUCCGCGG----------GC-CGAUGU-GCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 104200 0.71 0.478663
Target:  5'- gGGAcGGCGUCCaGGCgcucgcGCGCGGCGcGCa -3'
miRNA:   3'- gUCU-CCGCGGG-CCGa-----UGUGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 34912 0.7 0.526998
Target:  5'- gCGGAGGUcgggGCgCGGCcACGCGGgGGGCg -3'
miRNA:   3'- -GUCUCCG----CGgGCCGaUGUGCCgUUUG- -5'
23719 3' -58.2 NC_005261.1 + 43302 0.7 0.526998
Target:  5'- gGGGGGCG-CCGGCaGCcCGGCcAGCu -3'
miRNA:   3'- gUCUCCGCgGGCCGaUGuGCCGuUUG- -5'
23719 3' -58.2 NC_005261.1 + 121056 0.7 0.536891
Target:  5'- gCGGuuguGGCGCgCGGUgUGCGCGGCGccGGCg -3'
miRNA:   3'- -GUCu---CCGCGgGCCG-AUGUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 23159 0.7 0.536891
Target:  5'- aAGAGuGgGCCCGGCagGCGCGccgggggcgacaGCGAGCg -3'
miRNA:   3'- gUCUC-CgCGGGCCGa-UGUGC------------CGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 21205 0.7 0.536891
Target:  5'- gCGGAcgcuGGC-CCCGGCcGCgACGGCGGGCc -3'
miRNA:   3'- -GUCU----CCGcGGGCCGaUG-UGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 129579 0.7 0.536891
Target:  5'- aGGAGGCGgCCGcGCgccgcgggacACGCGGCAAu- -3'
miRNA:   3'- gUCUCCGCgGGC-CGa---------UGUGCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 76427 0.7 0.526998
Target:  5'- gCAGA-GCG-CCGGCgcCAUGGCGGACg -3'
miRNA:   3'- -GUCUcCGCgGGCCGauGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 45617 0.7 0.517173
Target:  5'- ---cGGCGgCgCGGCgcgGCGCGGCGGGCc -3'
miRNA:   3'- gucuCCGCgG-GCCGa--UGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 88594 0.7 0.517173
Target:  5'- -cGAGGCccgGCCCGGCggcgcCACGGUcguGACg -3'
miRNA:   3'- guCUCCG---CGGGCCGau---GUGCCGu--UUG- -5'
23719 3' -58.2 NC_005261.1 + 5557 0.7 0.517173
Target:  5'- gGGGGGCGCCCGa----GCGGCGGAg -3'
miRNA:   3'- gUCUCCGCGGGCcgaugUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 111554 0.7 0.517173
Target:  5'- gCGGAccGCcuGCCCGGCcgACGCGGCAGAg -3'
miRNA:   3'- -GUCUc-CG--CGGGCCGa-UGUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 51049 0.7 0.517173
Target:  5'- uGGAGGCGCCuaccacggCGGCUuucucggcguACACGGCc--- -3'
miRNA:   3'- gUCUCCGCGG--------GCCGA----------UGUGCCGuuug -5'
23719 3' -58.2 NC_005261.1 + 90399 0.7 0.516195
Target:  5'- gCGGGgcuGGCGCCCGGCgcggacUACGCgacguucgacgugGGCGGGCg -3'
miRNA:   3'- -GUCU---CCGCGGGCCG------AUGUG-------------CCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 75463 0.7 0.54585
Target:  5'- cCAGuuccAGGCGCCgGGCggcgGCGCGGgccgcuaCGAGCg -3'
miRNA:   3'- -GUC----UCCGCGGgCCGa---UGUGCC-------GUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.