miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 72448 0.87 0.049031
Target:  5'- gCGGGGGCGCCCgcGGCgaGCGCGGCGAGCg -3'
miRNA:   3'- -GUCUCCGCGGG--CCGa-UGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 126946 0.8 0.149462
Target:  5'- cCAGGGGCGCCgGGCgcggGgGCGGCAGcGCg -3'
miRNA:   3'- -GUCUCCGCGGgCCGa---UgUGCCGUU-UG- -5'
23719 3' -58.2 NC_005261.1 + 98207 0.79 0.157311
Target:  5'- gCAGcGGGCGCCgccaCGGCaGCGCGGCGGGCa -3'
miRNA:   3'- -GUC-UCCGCGG----GCCGaUGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 134565 0.79 0.16553
Target:  5'- uGGGcGGCGCCgCGGCUGCGCagGGCGGGCc -3'
miRNA:   3'- gUCU-CCGCGG-GCCGAUGUG--CCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 107642 0.78 0.207444
Target:  5'- -cGA-GCGCCCGcGCUGCGCGcGCAAACu -3'
miRNA:   3'- guCUcCGCGGGC-CGAUGUGC-CGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 129711 0.77 0.223336
Target:  5'- cCGGAGGCagGCCCgccGGCUGCAgCGGCAGGg -3'
miRNA:   3'- -GUCUCCG--CGGG---CCGAUGU-GCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 119998 0.77 0.228858
Target:  5'- uGGAGG-GCgCCGGCUACGCGGCc--- -3'
miRNA:   3'- gUCUCCgCG-GGCCGAUGUGCCGuuug -5'
23719 3' -58.2 NC_005261.1 + 242 0.76 0.24025
Target:  5'- -cGAGcGgGCCCGGCUGCGgCGGCGGcuGCg -3'
miRNA:   3'- guCUC-CgCGGGCCGAUGU-GCCGUU--UG- -5'
23719 3' -58.2 NC_005261.1 + 63460 0.76 0.24025
Target:  5'- -cGA-GCGCCCgcgagGGUUGCACGGCGAGCg -3'
miRNA:   3'- guCUcCGCGGG-----CCGAUGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 137925 0.76 0.24025
Target:  5'- -cGAGcGgGCCCGGCUGCGgCGGCGGcuGCg -3'
miRNA:   3'- guCUC-CgCGGGCCGAUGU-GCCGUU--UG- -5'
23719 3' -58.2 NC_005261.1 + 29400 0.76 0.246121
Target:  5'- -cGAGGCgGCCgCGcGCUACGCGGCGGccGCg -3'
miRNA:   3'- guCUCCG-CGG-GC-CGAUGUGCCGUU--UG- -5'
23719 3' -58.2 NC_005261.1 + 53456 0.76 0.252111
Target:  5'- gGGAGGuCGCCgGGCgggACGCaGCAGGCg -3'
miRNA:   3'- gUCUCC-GCGGgCCGa--UGUGcCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 129531 0.76 0.25454
Target:  5'- -cGAGGCGCgCgGGCUACgccgcaaggugcaagACGGCGGGCg -3'
miRNA:   3'- guCUCCGCG-GgCCGAUG---------------UGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 39861 0.76 0.25822
Target:  5'- --cGGGCGCCCaGGC-ACACGGCcAGCa -3'
miRNA:   3'- gucUCCGCGGG-CCGaUGUGCCGuUUG- -5'
23719 3' -58.2 NC_005261.1 + 97746 0.75 0.276621
Target:  5'- gCAGGGGCggggcggGCUCGGCgGCGCGGCcGGCa -3'
miRNA:   3'- -GUCUCCG-------CGGGCCGaUGUGCCGuUUG- -5'
23719 3' -58.2 NC_005261.1 + 28767 0.75 0.277274
Target:  5'- cCGGGGGCGCCUGGgc-CGCGGCGcgGGCg -3'
miRNA:   3'- -GUCUCCGCGGGCCgauGUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 127764 0.75 0.297433
Target:  5'- gCGGcGGGCgcgaagacGCCCGGCUGCucgaGCGGCGGGCc -3'
miRNA:   3'- -GUC-UCCG--------CGGGCCGAUG----UGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 75571 0.75 0.297433
Target:  5'- -cGGGGCGCUgGGCggcgGCGCGGCGcuCg -3'
miRNA:   3'- guCUCCGCGGgCCGa---UGUGCCGUuuG- -5'
23719 3' -58.2 NC_005261.1 + 107698 0.75 0.297433
Target:  5'- gCGGGGGCGCCgccgaaCGucGCUGcCGCGGCAGGCg -3'
miRNA:   3'- -GUCUCCGCGG------GC--CGAU-GUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 97125 0.75 0.311493
Target:  5'- cCGGAGGCGCCgCGGCcACGCucggaGGCGcuGGCg -3'
miRNA:   3'- -GUCUCCGCGG-GCCGaUGUG-----CCGU--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.