miRNA display CGI


Results 21 - 40 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 78149 0.74 0.326053
Target:  5'- ---cGGCGCCCGccGCUGC-CGGCGGGCc -3'
miRNA:   3'- gucuCCGCGGGC--CGAUGuGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 83361 0.74 0.326053
Target:  5'- aGGaAGGCGUCCacgucGGCgaGCGCGGCGAGCg -3'
miRNA:   3'- gUC-UCCGCGGG-----CCGa-UGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 43636 0.74 0.326053
Target:  5'- --uGGGCGCCCGuGUgGCGCGGCGguGACg -3'
miRNA:   3'- gucUCCGCGGGC-CGaUGUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 131750 0.74 0.341111
Target:  5'- gCGGAcGGCaCgCCGGCcgGCGCGGCGGGCg -3'
miRNA:   3'- -GUCU-CCGcG-GGCCGa-UGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 134998 0.74 0.341111
Target:  5'- -cGGGGCGCCCcug-GCGCGGCGGGCc -3'
miRNA:   3'- guCUCCGCGGGccgaUGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 56817 0.74 0.348827
Target:  5'- aCGGuguuccuGGUGCCgCGGCgGCACGGCAAGa -3'
miRNA:   3'- -GUCu------CCGCGG-GCCGaUGUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 3531 0.74 0.348827
Target:  5'- gCGGcGGcCGCCuCGGCgcgcaGCGCGGCGGGCg -3'
miRNA:   3'- -GUCuCC-GCGG-GCCGa----UGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 68710 0.74 0.356667
Target:  5'- aCGGcGGCG-CCGGCccucACGCGGCGGGCg -3'
miRNA:   3'- -GUCuCCGCgGGCCGa---UGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 81368 0.74 0.356667
Target:  5'- gGGGGGCGCCgGGCUcGCugGGgGcGCc -3'
miRNA:   3'- gUCUCCGCGGgCCGA-UGugCCgUuUG- -5'
23719 3' -58.2 NC_005261.1 + 5334 0.74 0.356667
Target:  5'- gAGAGGCGCgggucggccagCCGGCUGguCGGUGGAUa -3'
miRNA:   3'- gUCUCCGCG-----------GGCCGAUguGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 43992 0.74 0.356667
Target:  5'- uCGGAcguGGacaccucccaGCCCGGCUucgGCGCGGCGGGCg -3'
miRNA:   3'- -GUCU---CCg---------CGGGCCGA---UGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 129023 0.73 0.364629
Target:  5'- ---cGGCuGCCCGuagcCUACGCGGCAGACg -3'
miRNA:   3'- gucuCCG-CGGGCc---GAUGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 60274 0.73 0.371087
Target:  5'- aAGAGGCGCCCGGgguccgccccCGCGGCccGCa -3'
miRNA:   3'- gUCUCCGCGGGCCgau-------GUGCCGuuUG- -5'
23719 3' -58.2 NC_005261.1 + 45990 0.73 0.372714
Target:  5'- gCAGcacGGGCGCCauGUgUGCGCGGCAGGCg -3'
miRNA:   3'- -GUC---UCCGCGGgcCG-AUGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 97847 0.73 0.380919
Target:  5'- gCGGcGGGCGCCgccgCGGCaGCGCGGCcGGCa -3'
miRNA:   3'- -GUC-UCCGCGG----GCCGaUGUGCCGuUUG- -5'
23719 3' -58.2 NC_005261.1 + 88149 0.73 0.389244
Target:  5'- gCGGGGGCGcCCCGGCcGCGCaGcCGGGCc -3'
miRNA:   3'- -GUCUCCGC-GGGCCGaUGUGcC-GUUUG- -5'
23719 3' -58.2 NC_005261.1 + 108742 0.73 0.389244
Target:  5'- gCGGcGGCGCCgCGGCgucCGCGGCGcGCc -3'
miRNA:   3'- -GUCuCCGCGG-GCCGau-GUGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 71083 0.73 0.397688
Target:  5'- -cGGGGCGUCCgGGCccgagaaggcgUACACGGCGcGCa -3'
miRNA:   3'- guCUCCGCGGG-CCG-----------AUGUGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 3850 0.72 0.414924
Target:  5'- gCAGcGGCGCCgGcGCcGCGCGGCcGGCg -3'
miRNA:   3'- -GUCuCCGCGGgC-CGaUGUGCCGuUUG- -5'
23719 3' -58.2 NC_005261.1 + 76869 0.72 0.423712
Target:  5'- ---uGGCGCCCGGCgaggagGCcgACGGCAcGCu -3'
miRNA:   3'- gucuCCGCGGGCCGa-----UG--UGCCGUuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.