miRNA display CGI


Results 41 - 60 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 76869 0.72 0.423712
Target:  5'- ---uGGCGCCCGGCgaggagGCcgACGGCAcGCu -3'
miRNA:   3'- gucuCCGCGGGCCGa-----UG--UGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 47451 0.72 0.427258
Target:  5'- --cAGGCGCCCGGCccgcuugcgcggggGCugGGCGAu- -3'
miRNA:   3'- gucUCCGCGGGCCGa-------------UGugCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 136590 0.72 0.430822
Target:  5'- gCAGAGaCGCCCGGCgcagcguggaGCGGCGcGCg -3'
miRNA:   3'- -GUCUCcGCGGGCCGaug-------UGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 75845 0.72 0.43261
Target:  5'- gAGGGGCGCgCGGCgccgACGgCGGCcccGACg -3'
miRNA:   3'- gUCUCCGCGgGCCGa---UGU-GCCGu--UUG- -5'
23719 3' -58.2 NC_005261.1 + 31431 0.72 0.43261
Target:  5'- gGGAGGCGCUggCGGCgccGCcCGGCGAGg -3'
miRNA:   3'- gUCUCCGCGG--GCCGa--UGuGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 134188 0.72 0.43261
Target:  5'- gCGGAGG-GCCUGGCgcgGCuCGGCGcGCg -3'
miRNA:   3'- -GUCUCCgCGGGCCGa--UGuGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 130424 0.72 0.441616
Target:  5'- aGGAGGaGCCCGGC--CGCGGCGccuACg -3'
miRNA:   3'- gUCUCCgCGGGCCGauGUGCCGUu--UG- -5'
23719 3' -58.2 NC_005261.1 + 20573 0.72 0.450728
Target:  5'- gCAGcGGCG-CCGGCgGCGCGGguGGCc -3'
miRNA:   3'- -GUCuCCGCgGGCCGaUGUGCCguUUG- -5'
23719 3' -58.2 NC_005261.1 + 123081 0.72 0.450728
Target:  5'- gAGAGGCGgCCGGCcACgccauuucgccGCGGCGGGa -3'
miRNA:   3'- gUCUCCGCgGGCCGaUG-----------UGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 128574 0.71 0.459942
Target:  5'- ---uGGgGCCCGGUUGCgcugGCGGCAGAg -3'
miRNA:   3'- gucuCCgCGGGCCGAUG----UGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 121806 0.71 0.463655
Target:  5'- aGGGGGCGCgUGGCUGggcucugcgggccgcCGCGGCGGcGCa -3'
miRNA:   3'- gUCUCCGCGgGCCGAU---------------GUGCCGUU-UG- -5'
23719 3' -58.2 NC_005261.1 + 99777 0.71 0.466451
Target:  5'- gAGAGGCgGCCCGGgUcccagucgcggcgcGgAUGGCGAACa -3'
miRNA:   3'- gUCUCCG-CGGGCCgA--------------UgUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 33831 0.71 0.468319
Target:  5'- gGGGGGCGCgggccccCUGGC-GCugGGCGGGCc -3'
miRNA:   3'- gUCUCCGCG-------GGCCGaUGugCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 95761 0.71 0.469255
Target:  5'- cCGGGGGCGCCgggagccucgCGcGCUGCGcCGGCGcGCu -3'
miRNA:   3'- -GUCUCCGCGG----------GC-CGAUGU-GCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 84254 0.71 0.469255
Target:  5'- -cGGGGCGCuuGGCccccgGCAUGGCGc-- -3'
miRNA:   3'- guCUCCGCGggCCGa----UGUGCCGUuug -5'
23719 3' -58.2 NC_005261.1 + 104200 0.71 0.478663
Target:  5'- gGGAcGGCGUCCaGGCgcucgcGCGCGGCGcGCa -3'
miRNA:   3'- gUCU-CCGCGGG-CCGa-----UGUGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 32910 0.71 0.478663
Target:  5'- aAGGGGCGCgCGuGggGgGCGGCGGGCg -3'
miRNA:   3'- gUCUCCGCGgGC-CgaUgUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 33597 0.71 0.478663
Target:  5'- cCAGGGGCgGCgCCGGCgcGgGCGGCGGGg -3'
miRNA:   3'- -GUCUCCG-CG-GGCCGa-UgUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 132559 0.71 0.48721
Target:  5'- -cGAGGCGCaguaCGGCUGCGaagacguCGGCGcGCc -3'
miRNA:   3'- guCUCCGCGg---GCCGAUGU-------GCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 128795 0.71 0.488163
Target:  5'- --uGGGCGCCCGGgccCGCGGCGGGg -3'
miRNA:   3'- gucUCCGCGGGCCgauGUGCCGUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.