miRNA display CGI


Results 81 - 100 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 75463 0.7 0.54585
Target:  5'- cCAGuuccAGGCGCCgGGCggcgGCGCGGgccgcuaCGAGCg -3'
miRNA:   3'- -GUC----UCCGCGGgCCGa---UGUGCC-------GUUUG- -5'
23719 3' -58.2 NC_005261.1 + 1070 0.7 0.546848
Target:  5'- gGGGGGCugGCCCcGCUcCAgGGCGAGCc -3'
miRNA:   3'- gUCUCCG--CGGGcCGAuGUgCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 97083 0.7 0.556863
Target:  5'- uCGGAGGCG-CCGGCUGgGCcGgGGGCg -3'
miRNA:   3'- -GUCUCCGCgGGCCGAUgUGcCgUUUG- -5'
23719 3' -58.2 NC_005261.1 + 75513 0.7 0.556863
Target:  5'- uGGAGGCGCacgccguggucgCCGcGCUGCAgCGGCu-GCg -3'
miRNA:   3'- gUCUCCGCG------------GGC-CGAUGU-GCCGuuUG- -5'
23719 3' -58.2 NC_005261.1 + 16820 0.7 0.556863
Target:  5'- aCGGGGGCGUgCGGUa--GCGGCAGu- -3'
miRNA:   3'- -GUCUCCGCGgGCCGaugUGCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 34361 0.7 0.556863
Target:  5'- gGGccGGGCGCCgcgCGGCgcCGCGcGCAGACg -3'
miRNA:   3'- gUC--UCCGCGG---GCCGauGUGC-CGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 72510 0.7 0.565921
Target:  5'- aAGcGGGCGCCgcauccuccuuggCGGCUcgcuGCGCGGCAGGg -3'
miRNA:   3'- gUC-UCCGCGG-------------GCCGA----UGUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 97224 0.7 0.56693
Target:  5'- uCGGAGGCgcuggcgccgGCCCGGCcgGCugGGUc-GCg -3'
miRNA:   3'- -GUCUCCG----------CGGGCCGa-UGugCCGuuUG- -5'
23719 3' -58.2 NC_005261.1 + 32330 0.7 0.56693
Target:  5'- ---cGGCGCCCGGCguggccugggACGCGGaccaGGGCc -3'
miRNA:   3'- gucuCCGCGGGCCGa---------UGUGCCg---UUUG- -5'
23719 3' -58.2 NC_005261.1 + 30820 0.7 0.56693
Target:  5'- uGGGGGgGCCCGGggACGgGGCcGAg -3'
miRNA:   3'- gUCUCCgCGGGCCgaUGUgCCGuUUg -5'
23719 3' -58.2 NC_005261.1 + 30208 0.7 0.56693
Target:  5'- uGGAGGCGgCCGcGCUG-GCGGCGcgAACc -3'
miRNA:   3'- gUCUCCGCgGGC-CGAUgUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 12128 0.69 0.577043
Target:  5'- aGGAuGGCGCCCGcCgcCGCGGCGGccGCg -3'
miRNA:   3'- gUCU-CCGCGGGCcGauGUGCCGUU--UG- -5'
23719 3' -58.2 NC_005261.1 + 38244 0.69 0.577043
Target:  5'- -cGGGGCGCCgGGCUcGCACGcCAGc- -3'
miRNA:   3'- guCUCCGCGGgCCGA-UGUGCcGUUug -5'
23719 3' -58.2 NC_005261.1 + 113311 0.69 0.586178
Target:  5'- --cGGGCcuggGCCCGGCUgcgcgagaaggucGCGCGGCAcgGGCu -3'
miRNA:   3'- gucUCCG----CGGGCCGA-------------UGUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 118929 0.69 0.587195
Target:  5'- gCGGGcgcGGCGCCgcgCGGCUGgcCGCGGCGcACg -3'
miRNA:   3'- -GUCU---CCGCGG---GCCGAU--GUGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 88178 0.69 0.587195
Target:  5'- -cGGGGCGaCgCCGGCgGCGcCGGCGAGg -3'
miRNA:   3'- guCUCCGC-G-GGCCGaUGU-GCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 57398 0.69 0.587195
Target:  5'- gGGAGcGCGCCCGuGaucCGCGGCcGGCg -3'
miRNA:   3'- gUCUC-CGCGGGC-CgauGUGCCGuUUG- -5'
23719 3' -58.2 NC_005261.1 + 49180 0.69 0.587195
Target:  5'- -cGGGGUGCUCGGCcagGCccuCGGCcGACa -3'
miRNA:   3'- guCUCCGCGGGCCGa--UGu--GCCGuUUG- -5'
23719 3' -58.2 NC_005261.1 + 23458 0.69 0.587195
Target:  5'- gCAGaAGGCGCCaGGCc-CGCGGCGGc- -3'
miRNA:   3'- -GUC-UCCGCGGgCCGauGUGCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 66277 0.69 0.591265
Target:  5'- --cGGGCGCCCgcGGCUgucgcagugcgucagGCGCGGCAc-- -3'
miRNA:   3'- gucUCCGCGGG--CCGA---------------UGUGCCGUuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.