Results 21 - 40 of 250 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 31921 | 0.66 | 0.786499 |
Target: 5'- -cGGGGCGCCgccgcugGGCUcugcCGCGGCGccAACg -3' miRNA: 3'- guCUCCGCGGg------CCGAu---GUGCCGU--UUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 87361 | 0.66 | 0.786499 |
Target: 5'- uCGGGGcuaGCGCCCa-CcGCGCGGCAGAUg -3' miRNA: 3'- -GUCUC---CGCGGGccGaUGUGCCGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 13602 | 0.66 | 0.786499 |
Target: 5'- aGGAGuCGCCCGGggugUACACGuGgGAGCg -3' miRNA: 3'- gUCUCcGCGGGCCg---AUGUGC-CgUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 73367 | 0.66 | 0.78558 |
Target: 5'- uCAGGcGGCGCCagcagcgCGGCcACGCGcGCGuGCa -3' miRNA: 3'- -GUCU-CCGCGG-------GCCGaUGUGC-CGUuUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 66614 | 0.66 | 0.777251 |
Target: 5'- uGGAuGGCGCgCGuGC-GCAUGGCcGACg -3' miRNA: 3'- gUCU-CCGCGgGC-CGaUGUGCCGuUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 17732 | 0.66 | 0.777251 |
Target: 5'- uCGGAgcGGCGCUCGGa-GCG-GGCGGACu -3' miRNA: 3'- -GUCU--CCGCGGGCCgaUGUgCCGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 14994 | 0.66 | 0.777251 |
Target: 5'- cCGGccGCGCCCGGa-GCGCGGgAGGa -3' miRNA: 3'- -GUCucCGCGGGCCgaUGUGCCgUUUg -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 135452 | 0.66 | 0.777251 |
Target: 5'- gCGGcgcGGGCGCUgCGGgaccucguaCUGCGCGGCGAGa -3' miRNA: 3'- -GUC---UCCGCGG-GCC---------GAUGUGCCGUUUg -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 4511 | 0.66 | 0.777251 |
Target: 5'- cCAGucGcGCGCCCGcGCgggcgcCGCGGCGAGg -3' miRNA: 3'- -GUCu-C-CGCGGGC-CGau----GUGCCGUUUg -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 28538 | 0.66 | 0.777251 |
Target: 5'- cCGGAGGagGaCCCGGCccugcucgACGCGGCccGCc -3' miRNA: 3'- -GUCUCCg-C-GGGCCGa-------UGUGCCGuuUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 69250 | 0.66 | 0.777251 |
Target: 5'- -cGAGGCgcugGCCCGcGCcgACccCGGCGAGCc -3' miRNA: 3'- guCUCCG----CGGGC-CGa-UGu-GCCGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 12075 | 0.66 | 0.777251 |
Target: 5'- gCAGcGGCGUCCgcgccggggcGGCUcaaagGCGCGGCGccAGCu -3' miRNA: 3'- -GUCuCCGCGGG----------CCGA-----UGUGCCGU--UUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 107379 | 0.66 | 0.777251 |
Target: 5'- -cGGGGCGCCCGcGUccacgaACGGCcaGAGCc -3' miRNA: 3'- guCUCCGCGGGC-CGaug---UGCCG--UUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 89847 | 0.66 | 0.777251 |
Target: 5'- cCGGAGG-GCCgCGGCgucauCGGCGAGu -3' miRNA: 3'- -GUCUCCgCGG-GCCGaugu-GCCGUUUg -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 43671 | 0.66 | 0.77632 |
Target: 5'- -cGAGuCGCCCaugcagcGGCUcCACGGCGAGg -3' miRNA: 3'- guCUCcGCGGG-------CCGAuGUGCCGUUUg -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 77240 | 0.66 | 0.77632 |
Target: 5'- cCAGAGcGCaGCCgGGCUcaaaaggGCGCGcucGCGGGCg -3' miRNA: 3'- -GUCUC-CG-CGGgCCGA-------UGUGC---CGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 1868 | 0.66 | 0.767874 |
Target: 5'- aAGAcGCGCCgcgaGGCcaGCACGGCGcGCg -3' miRNA: 3'- gUCUcCGCGGg---CCGa-UGUGCCGUuUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 75072 | 0.66 | 0.767874 |
Target: 5'- ----cGCGCgCCGGCggggGCuCGGCGGGCa -3' miRNA: 3'- gucucCGCG-GGCCGa---UGuGCCGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 28716 | 0.66 | 0.767874 |
Target: 5'- -cGGGGgGCCCGGggGCcuCGGCGc-- -3' miRNA: 3'- guCUCCgCGGGCCgaUGu-GCCGUuug -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 122614 | 0.66 | 0.767874 |
Target: 5'- -uGucGUGCCUGuGCUugAaCGGCGAGCg -3' miRNA: 3'- guCucCGCGGGC-CGAugU-GCCGUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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