miRNA display CGI


Results 61 - 80 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 35433 0.67 0.748766
Target:  5'- gCAGAaGCGCCCGcccgccccGCgggucuagGCGCGGCGcGCg -3'
miRNA:   3'- -GUCUcCGCGGGC--------CGa-------UGUGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 46502 0.67 0.748766
Target:  5'- gCGGGGcGCaGCCCGGCgucGCGCaGCAc-- -3'
miRNA:   3'- -GUCUC-CG-CGGGCCGa--UGUGcCGUuug -5'
23719 3' -58.2 NC_005261.1 + 121478 0.67 0.748766
Target:  5'- ---cGGCGUaCCGGCUGCcgccacgggGCGGCGGGg -3'
miRNA:   3'- gucuCCGCG-GGCCGAUG---------UGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 38949 0.67 0.748766
Target:  5'- gCGGGccgcGGCGCgCgGGCUGCGCaGCAAc- -3'
miRNA:   3'- -GUCU----CCGCG-GgCCGAUGUGcCGUUug -5'
23719 3' -58.2 NC_005261.1 + 22121 0.67 0.748766
Target:  5'- gAGAGuGCGUgCGG-UAUACGGCGGGg -3'
miRNA:   3'- gUCUC-CGCGgGCCgAUGUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 75145 0.67 0.739053
Target:  5'- -cGA-GCGCCCccuGGCgacGCGCGGCAugGACu -3'
miRNA:   3'- guCUcCGCGGG---CCGa--UGUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 62086 0.67 0.739053
Target:  5'- -cGAGGCgcuGCCCaGCUGCACgauGGCGuuGGCc -3'
miRNA:   3'- guCUCCG---CGGGcCGAUGUG---CCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 131838 0.67 0.739053
Target:  5'- ---cGGCGCCCGccuGCUGCGgGGUguccAAGCg -3'
miRNA:   3'- gucuCCGCGGGC---CGAUGUgCCG----UUUG- -5'
23719 3' -58.2 NC_005261.1 + 60226 0.67 0.738077
Target:  5'- -cGGGGCGCCCccagGGCcGCcuccgccGCGGCGggAGCg -3'
miRNA:   3'- guCUCCGCGGG----CCGaUG-------UGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 133031 0.67 0.729247
Target:  5'- -cGGGcGCGCCaccgcgcacgcaCGuGCUGCGCGGCGuuGGCg -3'
miRNA:   3'- guCUC-CGCGG------------GC-CGAUGUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 29905 0.67 0.729247
Target:  5'- gCGGcAGcGCGCgagCGGCUGCGCgagcuGGCGGACg -3'
miRNA:   3'- -GUC-UC-CGCGg--GCCGAUGUG-----CCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 13112 0.67 0.729247
Target:  5'- uCGGGGGCGUCggCGGCcGCGgGGCGc-- -3'
miRNA:   3'- -GUCUCCGCGG--GCCGaUGUgCCGUuug -5'
23719 3' -58.2 NC_005261.1 + 17182 0.67 0.729247
Target:  5'- --uGGGCaGCCCuGCcGCgGCGGCGAGCa -3'
miRNA:   3'- gucUCCG-CGGGcCGaUG-UGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 109783 0.67 0.729247
Target:  5'- --cGGGCGuCCCGGCcgcugcUGCgACGGCcGGCg -3'
miRNA:   3'- gucUCCGC-GGGCCG------AUG-UGCCGuUUG- -5'
23719 3' -58.2 NC_005261.1 + 54483 0.67 0.729247
Target:  5'- --cGGGCGUCgGGCgGCAgGcGCAAACg -3'
miRNA:   3'- gucUCCGCGGgCCGaUGUgC-CGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 35939 0.67 0.729247
Target:  5'- cCAGcGGGCGCCCaGGCccgaGCcCGGcCAGGCc -3'
miRNA:   3'- -GUC-UCCGCGGG-CCGa---UGuGCC-GUUUG- -5'
23719 3' -58.2 NC_005261.1 + 29562 0.67 0.729247
Target:  5'- gCAGcuGGCGCgCCuGCUGCAgCGGCGcguGCa -3'
miRNA:   3'- -GUCu-CCGCG-GGcCGAUGU-GCCGUu--UG- -5'
23719 3' -58.2 NC_005261.1 + 69302 0.67 0.729247
Target:  5'- -cGGGGCGCCgguggCGGCgggaGCGgGGguGACg -3'
miRNA:   3'- guCUCCGCGG-----GCCGa---UGUgCCguUUG- -5'
23719 3' -58.2 NC_005261.1 + 108175 0.67 0.729247
Target:  5'- cCAG-GGCGCgCGGC--CGCGGCuccgGGCg -3'
miRNA:   3'- -GUCuCCGCGgGCCGauGUGCCGu---UUG- -5'
23719 3' -58.2 NC_005261.1 + 2811 0.67 0.729247
Target:  5'- gAGGGGCcgggcggccccaGCCCGaGCUcGgGCGGCAGGg -3'
miRNA:   3'- gUCUCCG------------CGGGC-CGA-UgUGCCGUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.