miRNA display CGI


Results 1 - 20 of 250 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 242 0.76 0.24025
Target:  5'- -cGAGcGgGCCCGGCUGCGgCGGCGGcuGCg -3'
miRNA:   3'- guCUC-CgCGGGCCGAUGU-GCCGUU--UG- -5'
23719 3' -58.2 NC_005261.1 + 341 0.66 0.795607
Target:  5'- gCGGcGGCccgcaGCCCGGCgcgGCccgGCGGCGguGGCg -3'
miRNA:   3'- -GUCuCCG-----CGGGCCGa--UG---UGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 455 0.66 0.795607
Target:  5'- aCGGGGGcCGCgacggCCGGCgggaugGCGCGGgGAGg -3'
miRNA:   3'- -GUCUCC-GCG-----GGCCGa-----UGUGCCgUUUg -5'
23719 3' -58.2 NC_005261.1 + 519 0.67 0.719357
Target:  5'- gGGAgGGCGCgggCgGGCgggggGCAgGGCGGACg -3'
miRNA:   3'- gUCU-CCGCG---GgCCGa----UGUgCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 1070 0.7 0.546848
Target:  5'- gGGGGGCugGCCCcGCUcCAgGGCGAGCc -3'
miRNA:   3'- gUCUCCG--CGGGcCGAuGUgCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 1398 0.69 0.60759
Target:  5'- --cGGGCGCCgCGGC--CGCGGCGgcGGCg -3'
miRNA:   3'- gucUCCGCGG-GCCGauGUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 1449 0.68 0.6383
Target:  5'- gCGGcGGCGCCuCGGCgu-GCGGCuccAGCa -3'
miRNA:   3'- -GUCuCCGCGG-GCCGaugUGCCGu--UUG- -5'
23719 3' -58.2 NC_005261.1 + 1868 0.66 0.767874
Target:  5'- aAGAcGCGCCgcgaGGCcaGCACGGCGcGCg -3'
miRNA:   3'- gUCUcCGCGGg---CCGa-UGUGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 2402 0.68 0.658763
Target:  5'- -cGAGcGCGCCCgcgGGCcccGCGCGGCGGc- -3'
miRNA:   3'- guCUC-CGCGGG---CCGa--UGUGCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 2686 0.67 0.699362
Target:  5'- cCGGcGGCGCgCCGGCUuu-UGGCcGGCg -3'
miRNA:   3'- -GUCuCCGCG-GGCCGAuguGCCGuUUG- -5'
23719 3' -58.2 NC_005261.1 + 2744 0.66 0.795607
Target:  5'- ----uGCGCCgCGGCgggccguCGCGGCGGGCc -3'
miRNA:   3'- gucucCGCGG-GCCGau-----GUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 2811 0.67 0.729247
Target:  5'- gAGGGGCcgggcggccccaGCCCGaGCUcGgGCGGCAGGg -3'
miRNA:   3'- gUCUCCG------------CGGGC-CGA-UgUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 3158 0.69 0.628058
Target:  5'- -cGAGGC-CCCGGCg--GCGGCGGc- -3'
miRNA:   3'- guCUCCGcGGGCCGaugUGCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 3349 0.68 0.648538
Target:  5'- ---cGGCGCCCGGC-GCGcCGGCcuucagggccgcGAGCg -3'
miRNA:   3'- gucuCCGCGGGCCGaUGU-GCCG------------UUUG- -5'
23719 3' -58.2 NC_005261.1 + 3531 0.74 0.348827
Target:  5'- gCGGcGGcCGCCuCGGCgcgcaGCGCGGCGGGCg -3'
miRNA:   3'- -GUCuCC-GCGG-GCCGa----UGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 3850 0.72 0.414924
Target:  5'- gCAGcGGCGCCgGcGCcGCGCGGCcGGCg -3'
miRNA:   3'- -GUCuCCGCGGgC-CGaUGUGCCGuUUG- -5'
23719 3' -58.2 NC_005261.1 + 3903 0.67 0.709392
Target:  5'- gCGGcgcGGGCGCCCGcGCcGC-CGGCGccGGCc -3'
miRNA:   3'- -GUC---UCCGCGGGC-CGaUGuGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 4155 0.66 0.795607
Target:  5'- gCAGcAGGCGCgCCaGCUGCAgGuccgggcccGCGAGCu -3'
miRNA:   3'- -GUC-UCCGCG-GGcCGAUGUgC---------CGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 4511 0.66 0.777251
Target:  5'- cCAGucGcGCGCCCGcGCgggcgcCGCGGCGAGg -3'
miRNA:   3'- -GUCu-C-CGCGGGC-CGau----GUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 5334 0.74 0.356667
Target:  5'- gAGAGGCGCgggucggccagCCGGCUGguCGGUGGAUa -3'
miRNA:   3'- gUCUCCGCG-----------GGCCGAUguGCCGUUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.