miRNA display CGI


Results 21 - 40 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 5557 0.7 0.517173
Target:  5'- gGGGGGCGCCCGa----GCGGCGGAg -3'
miRNA:   3'- gUCUCCGCGGGCcgaugUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 6063 0.66 0.767874
Target:  5'- aAGGGGC-CCCucgucccgacGGCg--GCGGCAAGCa -3'
miRNA:   3'- gUCUCCGcGGG----------CCGaugUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 8821 0.68 0.658763
Target:  5'- aAGGGGCGCCCgccgGGCaaggggGCGgGGaCAGGCc -3'
miRNA:   3'- gUCUCCGCGGG----CCGa-----UGUgCC-GUUUG- -5'
23719 3' -58.2 NC_005261.1 + 12075 0.66 0.777251
Target:  5'- gCAGcGGCGUCCgcgccggggcGGCUcaaagGCGCGGCGccAGCu -3'
miRNA:   3'- -GUCuCCGCGGG----------CCGA-----UGUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 12128 0.69 0.577043
Target:  5'- aGGAuGGCGCCCGcCgcCGCGGCGGccGCg -3'
miRNA:   3'- gUCU-CCGCGGGCcGauGUGCCGUU--UG- -5'
23719 3' -58.2 NC_005261.1 + 13112 0.67 0.729247
Target:  5'- uCGGGGGCGUCggCGGCcGCGgGGCGc-- -3'
miRNA:   3'- -GUCUCCGCGG--GCCGaUGUgCCGUuug -5'
23719 3' -58.2 NC_005261.1 + 13602 0.66 0.786499
Target:  5'- aGGAGuCGCCCGGggugUACACGuGgGAGCg -3'
miRNA:   3'- gUCUCcGCGGGCCg---AUGUGC-CgUUUG- -5'
23719 3' -58.2 NC_005261.1 + 13683 0.71 0.497751
Target:  5'- -cGGGGCGCgCgGGCgugggGCGgGGCGGGCu -3'
miRNA:   3'- guCUCCGCG-GgCCGa----UGUgCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 14829 0.68 0.648538
Target:  5'- aUAGAuGCGCCgGGa-GCACGGCAGcagGCg -3'
miRNA:   3'- -GUCUcCGCGGgCCgaUGUGCCGUU---UG- -5'
23719 3' -58.2 NC_005261.1 + 14994 0.66 0.777251
Target:  5'- cCGGccGCGCCCGGa-GCGCGGgAGGa -3'
miRNA:   3'- -GUCucCGCGGGCCgaUGUGCCgUUUg -5'
23719 3' -58.2 NC_005261.1 + 15368 0.66 0.758376
Target:  5'- cCGGcGGCGCUCGGCgcccuCGGCGc-- -3'
miRNA:   3'- -GUCuCCGCGGGCCGaugu-GCCGUuug -5'
23719 3' -58.2 NC_005261.1 + 16292 0.67 0.729247
Target:  5'- gGGGGGCGCCgucgGGCccaGCGGCGGc- -3'
miRNA:   3'- gUCUCCGCGGg---CCGaugUGCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 16820 0.7 0.556863
Target:  5'- aCGGGGGCGUgCGGUa--GCGGCAGu- -3'
miRNA:   3'- -GUCUCCGCGgGCCGaugUGCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 17182 0.67 0.729247
Target:  5'- --uGGGCaGCCCuGCcGCgGCGGCGAGCa -3'
miRNA:   3'- gucUCCG-CGGGcCGaUG-UGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 17732 0.66 0.777251
Target:  5'- uCGGAgcGGCGCUCGGa-GCG-GGCGGACu -3'
miRNA:   3'- -GUCU--CCGCGGGCCgaUGUgCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 18684 0.66 0.786499
Target:  5'- aAGGGGC-CCCaGGCUguuGCGGCGcACg -3'
miRNA:   3'- gUCUCCGcGGG-CCGAug-UGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 18784 0.68 0.6383
Target:  5'- gCAGcGGCGagggugCCGGCUugaGCGgCGGCGGGCa -3'
miRNA:   3'- -GUCuCCGCg-----GGCCGA---UGU-GCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 19057 0.69 0.60759
Target:  5'- gCAGGGGUa-CgGGCUGCGCGGCucucGGCg -3'
miRNA:   3'- -GUCUCCGcgGgCCGAUGUGCCGu---UUG- -5'
23719 3' -58.2 NC_005261.1 + 19959 0.68 0.658763
Target:  5'- -uGGGGCgGCCuCGGCU--GCGGCAgcGACc -3'
miRNA:   3'- guCUCCG-CGG-GCCGAugUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 20573 0.72 0.450728
Target:  5'- gCAGcGGCG-CCGGCgGCGCGGguGGCc -3'
miRNA:   3'- -GUCuCCGCgGGCCGaUGUGCCguUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.