miRNA display CGI


Results 41 - 60 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 21205 0.7 0.536891
Target:  5'- gCGGAcgcuGGC-CCCGGCcGCgACGGCGGGCc -3'
miRNA:   3'- -GUCU----CCGcGGGCCGaUG-UGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 22121 0.67 0.748766
Target:  5'- gAGAGuGCGUgCGG-UAUACGGCGGGg -3'
miRNA:   3'- gUCUC-CGCGgGCCgAUGUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 23003 0.68 0.668966
Target:  5'- gAGGGGgGCCCGGag--GCGGCccgcGAACg -3'
miRNA:   3'- gUCUCCgCGGGCCgaugUGCCG----UUUG- -5'
23719 3' -58.2 NC_005261.1 + 23159 0.7 0.536891
Target:  5'- aAGAGuGgGCCCGGCagGCGCGccgggggcgacaGCGAGCg -3'
miRNA:   3'- gUCUC-CgCGGGCCGa-UGUGC------------CGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 23458 0.69 0.587195
Target:  5'- gCAGaAGGCGCCaGGCc-CGCGGCGGc- -3'
miRNA:   3'- -GUC-UCCGCGGgCCGauGUGCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 23702 0.71 0.507423
Target:  5'- -cGAGGCccGCCCGGUcGgGUGGCAAGCg -3'
miRNA:   3'- guCUCCG--CGGGCCGaUgUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 24901 0.67 0.703381
Target:  5'- cCGGcGGGCGCCCcuucaagcccucggcGGCUGCagccgccgaGgGGCAGGCu -3'
miRNA:   3'- -GUC-UCCGCGGG---------------CCGAUG---------UgCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 27240 0.69 0.628058
Target:  5'- gGGAGGCGCCUGGggugggGCGgGGUguGCg -3'
miRNA:   3'- gUCUCCGCGGGCCga----UGUgCCGuuUG- -5'
23719 3' -58.2 NC_005261.1 + 28538 0.66 0.777251
Target:  5'- cCGGAGGagGaCCCGGCccugcucgACGCGGCccGCc -3'
miRNA:   3'- -GUCUCCg-C-GGGCCGa-------UGUGCCGuuUG- -5'
23719 3' -58.2 NC_005261.1 + 28579 0.68 0.689274
Target:  5'- -cGAGGCGCgCGaGC-GC-CGGCGGGCc -3'
miRNA:   3'- guCUCCGCGgGC-CGaUGuGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 28716 0.66 0.767874
Target:  5'- -cGGGGgGCCCGGggGCcuCGGCGc-- -3'
miRNA:   3'- guCUCCgCGGGCCgaUGu-GCCGUuug -5'
23719 3' -58.2 NC_005261.1 + 28767 0.75 0.277274
Target:  5'- cCGGGGGCGCCUGGgc-CGCGGCGcgGGCg -3'
miRNA:   3'- -GUCUCCGCGGGCCgauGUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 28831 0.68 0.668966
Target:  5'- -cGAGGCgGCCgCGGCUGagGCGGCc--- -3'
miRNA:   3'- guCUCCG-CGG-GCCGAUg-UGCCGuuug -5'
23719 3' -58.2 NC_005261.1 + 29200 0.66 0.79289
Target:  5'- ---cGGCGCCCGcGCggGCGCGcgacuggggcccgcGCAGGCu -3'
miRNA:   3'- gucuCCGCGGGC-CGa-UGUGC--------------CGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 29400 0.76 0.246121
Target:  5'- -cGAGGCgGCCgCGcGCUACGCGGCGGccGCg -3'
miRNA:   3'- guCUCCG-CGG-GC-CGAUGUGCCGUU--UG- -5'
23719 3' -58.2 NC_005261.1 + 29562 0.67 0.729247
Target:  5'- gCAGcuGGCGCgCCuGCUGCAgCGGCGcguGCa -3'
miRNA:   3'- -GUCu-CCGCG-GGcCGAUGU-GCCGUu--UG- -5'
23719 3' -58.2 NC_005261.1 + 29797 0.69 0.628058
Target:  5'- cCGGAGGCcgGCgCCGGCgGCGCgGGCGc-- -3'
miRNA:   3'- -GUCUCCG--CG-GGCCGaUGUG-CCGUuug -5'
23719 3' -58.2 NC_005261.1 + 29905 0.67 0.729247
Target:  5'- gCGGcAGcGCGCgagCGGCUGCGCgagcuGGCGGACg -3'
miRNA:   3'- -GUC-UC-CGCGg--GCCGAUGUG-----CCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 29960 0.71 0.507423
Target:  5'- -cGAGGCGCUagaGGCgGCGCGGU--GCg -3'
miRNA:   3'- guCUCCGCGGg--CCGaUGUGCCGuuUG- -5'
23719 3' -58.2 NC_005261.1 + 30208 0.7 0.56693
Target:  5'- uGGAGGCGgCCGcGCUG-GCGGCGcgAACc -3'
miRNA:   3'- gUCUCCGCgGGC-CGAUgUGCCGU--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.