miRNA display CGI


Results 61 - 80 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 30820 0.7 0.56693
Target:  5'- uGGGGGgGCCCGGggACGgGGCcGAg -3'
miRNA:   3'- gUCUCCgCGGGCCgaUGUgCCGuUUg -5'
23719 3' -58.2 NC_005261.1 + 31431 0.72 0.43261
Target:  5'- gGGAGGCGCUggCGGCgccGCcCGGCGAGg -3'
miRNA:   3'- gUCUCCGCGG--GCCGa--UGuGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 31478 0.68 0.689274
Target:  5'- gAGuGGC-CgCCGG-UGCGCGGCGGGCu -3'
miRNA:   3'- gUCuCCGcG-GGCCgAUGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 31593 0.69 0.60759
Target:  5'- -uGAGcGCGCUCGGCgcGCAgGGCGuGCu -3'
miRNA:   3'- guCUC-CGCGGGCCGa-UGUgCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 31921 0.66 0.786499
Target:  5'- -cGGGGCGCCgccgcugGGCUcugcCGCGGCGccAACg -3'
miRNA:   3'- guCUCCGCGGg------CCGAu---GUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 32201 0.67 0.709392
Target:  5'- uGGAgcuGGCGCCCGacgaGCUGCcggccGCGGCGGu- -3'
miRNA:   3'- gUCU---CCGCGGGC----CGAUG-----UGCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 32330 0.7 0.56693
Target:  5'- ---cGGCGCCCGGCguggccugggACGCGGaccaGGGCc -3'
miRNA:   3'- gucuCCGCGGGCCGa---------UGUGCCg---UUUG- -5'
23719 3' -58.2 NC_005261.1 + 32782 0.68 0.6383
Target:  5'- gAGAGGgagGCCCGGCUgGgGgGGCAAAg -3'
miRNA:   3'- gUCUCCg--CGGGCCGA-UgUgCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 32910 0.71 0.478663
Target:  5'- aAGGGGCGCgCGuGggGgGCGGCGGGCg -3'
miRNA:   3'- gUCUCCGCGgGC-CgaUgUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 33056 0.68 0.6383
Target:  5'- cCAGGacucGGCGCCgGGg-ACGCGGCGcuGGCg -3'
miRNA:   3'- -GUCU----CCGCGGgCCgaUGUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 33597 0.71 0.478663
Target:  5'- cCAGGGGCgGCgCCGGCgcGgGCGGCGGGg -3'
miRNA:   3'- -GUCUCCG-CG-GGCCGa-UgUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 33755 0.67 0.719357
Target:  5'- -cGGGGCcggGCCCGcucGCggggccCGCGGCGAGCg -3'
miRNA:   3'- guCUCCG---CGGGC---CGau----GUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 33831 0.71 0.468319
Target:  5'- gGGGGGCGCgggccccCUGGC-GCugGGCGGGCc -3'
miRNA:   3'- gUCUCCGCG-------GGCCGaUGugCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 34329 0.66 0.767874
Target:  5'- -cGAGGgGCCCcaaggGGCcgGgGCGGCcGACg -3'
miRNA:   3'- guCUCCgCGGG-----CCGa-UgUGCCGuUUG- -5'
23719 3' -58.2 NC_005261.1 + 34361 0.7 0.556863
Target:  5'- gGGccGGGCGCCgcgCGGCgcCGCGcGCAGACg -3'
miRNA:   3'- gUC--UCCGCGG---GCCGauGUGC-CGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 34912 0.7 0.526998
Target:  5'- gCGGAGGUcgggGCgCGGCcACGCGGgGGGCg -3'
miRNA:   3'- -GUCUCCG----CGgGCCGaUGUGCCgUUUG- -5'
23719 3' -58.2 NC_005261.1 + 35228 0.67 0.699362
Target:  5'- uGGAGGgGaCCCGGCaggaggagAgGCGGCGGGa -3'
miRNA:   3'- gUCUCCgC-GGGCCGa-------UgUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 35433 0.67 0.748766
Target:  5'- gCAGAaGCGCCCGcccgccccGCgggucuagGCGCGGCGcGCg -3'
miRNA:   3'- -GUCUcCGCGGGC--------CGa-------UGUGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 35594 0.69 0.597379
Target:  5'- cCGGAccccaGCGCCCGGCcccgcCGCGGCAGc- -3'
miRNA:   3'- -GUCUc----CGCGGGCCGau---GUGCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 35939 0.67 0.729247
Target:  5'- cCAGcGGGCGCCCaGGCccgaGCcCGGcCAGGCc -3'
miRNA:   3'- -GUC-UCCGCGGG-CCGa---UGuGCC-GUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.