Results 81 - 100 of 250 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 38244 | 0.69 | 0.577043 |
Target: 5'- -cGGGGCGCCgGGCUcGCACGcCAGc- -3' miRNA: 3'- guCUCCGCGGgCCGA-UGUGCcGUUug -5' |
|||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 38275 | 0.66 | 0.758376 |
Target: 5'- uGGGGGCGgCUGGUgcACGCGGUgcuggcccgccuGAGCg -3' miRNA: 3'- gUCUCCGCgGGCCGa-UGUGCCG------------UUUG- -5' |
|||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 38519 | 0.68 | 0.648538 |
Target: 5'- aAGGcGCGCgCUGGCUGCGCGcGcCGGGCa -3' miRNA: 3'- gUCUcCGCG-GGCCGAUGUGC-C-GUUUG- -5' |
|||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 38548 | 0.68 | 0.668966 |
Target: 5'- aCAGcgccGGCGCgCGGCcAUGCGGCGGGu -3' miRNA: 3'- -GUCu---CCGCGgGCCGaUGUGCCGUUUg -5' |
|||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 38949 | 0.67 | 0.748766 |
Target: 5'- gCGGGccgcGGCGCgCgGGCUGCGCaGCAAc- -3' miRNA: 3'- -GUCU----CCGCG-GgCCGAUGUGcCGUUug -5' |
|||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 39794 | 0.66 | 0.786499 |
Target: 5'- gGGGGGCGgCgCGGCcGC-CGGCGccaGGCu -3' miRNA: 3'- gUCUCCGCgG-GCCGaUGuGCCGU---UUG- -5' |
|||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 39861 | 0.76 | 0.25822 |
Target: 5'- --cGGGCGCCCaGGC-ACACGGCcAGCa -3' miRNA: 3'- gucUCCGCGGG-CCGaUGUGCCGuUUG- -5' |
|||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 43302 | 0.7 | 0.526998 |
Target: 5'- gGGGGGCG-CCGGCaGCcCGGCcAGCu -3' miRNA: 3'- gUCUCCGCgGGCCGaUGuGCCGuUUG- -5' |
|||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 43636 | 0.74 | 0.326053 |
Target: 5'- --uGGGCGCCCGuGUgGCGCGGCGguGACg -3' miRNA: 3'- gucUCCGCGGGC-CGaUGUGCCGU--UUG- -5' |
|||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 43671 | 0.66 | 0.77632 |
Target: 5'- -cGAGuCGCCCaugcagcGGCUcCACGGCGAGg -3' miRNA: 3'- guCUCcGCGGG-------CCGAuGUGCCGUUUg -5' |
|||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 43992 | 0.74 | 0.356667 |
Target: 5'- uCGGAcguGGacaccucccaGCCCGGCUucgGCGCGGCGGGCg -3' miRNA: 3'- -GUCU---CCg---------CGGGCCGA---UGUGCCGUUUG- -5' |
|||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 44275 | 0.66 | 0.758376 |
Target: 5'- gGGGGGCgggGCCCGccGCca-GCGGCGGGCc -3' miRNA: 3'- gUCUCCG---CGGGC--CGaugUGCCGUUUG- -5' |
|||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 45617 | 0.7 | 0.517173 |
Target: 5'- ---cGGCGgCgCGGCgcgGCGCGGCGGGCc -3' miRNA: 3'- gucuCCGCgG-GCCGa--UGUGCCGUUUG- -5' |
|||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 45990 | 0.73 | 0.372714 |
Target: 5'- gCAGcacGGGCGCCauGUgUGCGCGGCAGGCg -3' miRNA: 3'- -GUC---UCCGCGGgcCG-AUGUGCCGUUUG- -5' |
|||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 46281 | 0.69 | 0.597379 |
Target: 5'- -cGGGGCGCuCUGGCcggGCaACGGCGcGCc -3' miRNA: 3'- guCUCCGCG-GGCCGa--UG-UGCCGUuUG- -5' |
|||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 46502 | 0.67 | 0.748766 |
Target: 5'- gCGGGGcGCaGCCCGGCgucGCGCaGCAc-- -3' miRNA: 3'- -GUCUC-CG-CGGGCCGa--UGUGcCGUuug -5' |
|||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 46795 | 0.69 | 0.597379 |
Target: 5'- --cGGGCGCCCGucGCgGCGCGcGCGGAUg -3' miRNA: 3'- gucUCCGCGGGC--CGaUGUGC-CGUUUG- -5' |
|||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 47451 | 0.72 | 0.427258 |
Target: 5'- --cAGGCGCCCGGCccgcuugcgcggggGCugGGCGAu- -3' miRNA: 3'- gucUCCGCGGGCCGa-------------UGugCCGUUug -5' |
|||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 48312 | 0.7 | 0.516195 |
Target: 5'- gGGGGGCgcgucggGCCCgGGCUcgggggcgcGCGCGGCGAGg -3' miRNA: 3'- gUCUCCG-------CGGG-CCGA---------UGUGCCGUUUg -5' |
|||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 49180 | 0.69 | 0.587195 |
Target: 5'- -cGGGGUGCUCGGCcagGCccuCGGCcGACa -3' miRNA: 3'- guCUCCGCGGGCCGa--UGu--GCCGuUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home