miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 138190 0.67 0.719357
Target:  5'- gGGAgGGCGCgggCgGGCgggggGCAgGGCGGACg -3'
miRNA:   3'- gUCU-CCGCG---GgCCGa----UGUgCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 138126 0.66 0.795607
Target:  5'- aCGGGGGcCGCgacggCCGGCgggaugGCGCGGgGAGg -3'
miRNA:   3'- -GUCUCC-GCG-----GGCCGa-----UGUGCCgUUUg -5'
23719 3' -58.2 NC_005261.1 + 138012 0.66 0.795607
Target:  5'- gCGGcGGCccgcaGCCCGGCgcgGCccgGCGGCGguGGCg -3'
miRNA:   3'- -GUCuCCG-----CGGGCCGa--UG---UGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 137925 0.76 0.24025
Target:  5'- -cGAGcGgGCCCGGCUGCGgCGGCGGcuGCg -3'
miRNA:   3'- guCUC-CgCGGGCCGAUGU-GCCGUU--UG- -5'
23719 3' -58.2 NC_005261.1 + 136590 0.72 0.430822
Target:  5'- gCAGAGaCGCCCGGCgcagcguggaGCGGCGcGCg -3'
miRNA:   3'- -GUCUCcGCGGGCCGaug-------UGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 136387 0.68 0.6383
Target:  5'- -cGAGGUGCCgGGaCUGgG-GGCGGACg -3'
miRNA:   3'- guCUCCGCGGgCC-GAUgUgCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 135452 0.66 0.777251
Target:  5'- gCGGcgcGGGCGCUgCGGgaccucguaCUGCGCGGCGAGa -3'
miRNA:   3'- -GUC---UCCGCGG-GCC---------GAUGUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 135082 0.66 0.795607
Target:  5'- gCGGcGGGCucgcgGCCCGGCggcggaGCGCgaGGCGGACc -3'
miRNA:   3'- -GUC-UCCG-----CGGGCCGa-----UGUG--CCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 134998 0.74 0.341111
Target:  5'- -cGGGGCGCCCcug-GCGCGGCGGGCc -3'
miRNA:   3'- guCUCCGCGGGccgaUGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 134565 0.79 0.16553
Target:  5'- uGGGcGGCGCCgCGGCUGCGCagGGCGGGCc -3'
miRNA:   3'- gUCU-CCGCGG-GCCGAUGUG--CCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 134516 0.68 0.668966
Target:  5'- aCAGccuGCGCCUGcaGCUGCugGGCGcGCa -3'
miRNA:   3'- -GUCuc-CGCGGGC--CGAUGugCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 134188 0.72 0.43261
Target:  5'- gCGGAGG-GCCUGGCgcgGCuCGGCGcGCg -3'
miRNA:   3'- -GUCUCCgCGGGCCGa--UGuGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 133031 0.67 0.729247
Target:  5'- -cGGGcGCGCCaccgcgcacgcaCGuGCUGCGCGGCGuuGGCg -3'
miRNA:   3'- guCUC-CGCGG------------GC-CGAUGUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 132622 0.67 0.71538
Target:  5'- aGGGGGCG-CUGGCgccgaggacgcggGCGCGGCGGc- -3'
miRNA:   3'- gUCUCCGCgGGCCGa------------UGUGCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 132597 0.66 0.758376
Target:  5'- ---cGGaCGCCCGGCc---CGGCGAGCc -3'
miRNA:   3'- gucuCC-GCGGGCCGauguGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 132559 0.71 0.48721
Target:  5'- -cGAGGCGCaguaCGGCUGCGaagacguCGGCGcGCc -3'
miRNA:   3'- guCUCCGCGg---GCCGAUGU-------GCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 131838 0.67 0.739053
Target:  5'- ---cGGCGCCCGccuGCUGCGgGGUguccAAGCg -3'
miRNA:   3'- gucuCCGCGGGC---CGAUGUgCCG----UUUG- -5'
23719 3' -58.2 NC_005261.1 + 131750 0.74 0.341111
Target:  5'- gCGGAcGGCaCgCCGGCcgGCGCGGCGGGCg -3'
miRNA:   3'- -GUCU-CCGcG-GGCCGa-UGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 130775 0.68 0.668966
Target:  5'- gCAGcuGGCGCCCcgcgcuGGCcGCACcGCGGACg -3'
miRNA:   3'- -GUCu-CCGCGGG------CCGaUGUGcCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 130639 0.67 0.703381
Target:  5'- -cGGGGCGCgCGugcgcucgccgacgcGCUGCuccuCGGCGAGCc -3'
miRNA:   3'- guCUCCGCGgGC---------------CGAUGu---GCCGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.