miRNA display CGI


Results 21 - 40 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 130424 0.72 0.441616
Target:  5'- aGGAGGaGCCCGGC--CGCGGCGccuACg -3'
miRNA:   3'- gUCUCCgCGGGCCGauGUGCCGUu--UG- -5'
23719 3' -58.2 NC_005261.1 + 129743 0.67 0.709392
Target:  5'- gCGGcGGgGCCCGGCcuucaGCAcCGGCGAc- -3'
miRNA:   3'- -GUCuCCgCGGGCCGa----UGU-GCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 129711 0.77 0.223336
Target:  5'- cCGGAGGCagGCCCgccGGCUGCAgCGGCAGGg -3'
miRNA:   3'- -GUCUCCG--CGGG---CCGAUGU-GCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 129579 0.7 0.536891
Target:  5'- aGGAGGCGgCCGcGCgccgcgggacACGCGGCAAu- -3'
miRNA:   3'- gUCUCCGCgGGC-CGa---------UGUGCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 129531 0.76 0.25454
Target:  5'- -cGAGGCGCgCgGGCUACgccgcaaggugcaagACGGCGGGCg -3'
miRNA:   3'- guCUCCGCG-GgCCGAUG---------------UGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 129023 0.73 0.364629
Target:  5'- ---cGGCuGCCCGuagcCUACGCGGCAGACg -3'
miRNA:   3'- gucuCCG-CGGGCc---GAUGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 128795 0.71 0.488163
Target:  5'- --uGGGCGCCCGGgccCGCGGCGGGg -3'
miRNA:   3'- gucUCCGCGGGCCgauGUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 128574 0.71 0.459942
Target:  5'- ---uGGgGCCCGGUUGCgcugGCGGCAGAg -3'
miRNA:   3'- gucuCCgCGGGCCGAUG----UGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 127764 0.75 0.297433
Target:  5'- gCGGcGGGCgcgaagacGCCCGGCUGCucgaGCGGCGGGCc -3'
miRNA:   3'- -GUC-UCCG--------CGGGCCGAUG----UGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 127655 0.66 0.767874
Target:  5'- gGGGGGCGCgCGGgUuCGgGGCGGGa -3'
miRNA:   3'- gUCUCCGCGgGCCgAuGUgCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 126946 0.8 0.149462
Target:  5'- cCAGGGGCGCCgGGCgcggGgGCGGCAGcGCg -3'
miRNA:   3'- -GUCUCCGCGGgCCGa---UgUGCCGUU-UG- -5'
23719 3' -58.2 NC_005261.1 + 123081 0.72 0.450728
Target:  5'- gAGAGGCGgCCGGCcACgccauuucgccGCGGCGGGa -3'
miRNA:   3'- gUCUCCGCgGGCCGaUG-----------UGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 122614 0.66 0.767874
Target:  5'- -uGucGUGCCUGuGCUugAaCGGCGAGCg -3'
miRNA:   3'- guCucCGCGGGC-CGAugU-GCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 122345 0.71 0.488163
Target:  5'- gCAGAGcuCGCCUGGCggcCGCGGCucGCg -3'
miRNA:   3'- -GUCUCc-GCGGGCCGau-GUGCCGuuUG- -5'
23719 3' -58.2 NC_005261.1 + 121806 0.71 0.463655
Target:  5'- aGGGGGCGCgUGGCUGggcucugcgggccgcCGCGGCGGcGCa -3'
miRNA:   3'- gUCUCCGCGgGCCGAU---------------GUGCCGUU-UG- -5'
23719 3' -58.2 NC_005261.1 + 121478 0.67 0.748766
Target:  5'- ---cGGCGUaCCGGCUGCcgccacgggGCGGCGGGg -3'
miRNA:   3'- gucuCCGCG-GGCCGAUG---------UGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 121056 0.7 0.536891
Target:  5'- gCGGuuguGGCGCgCGGUgUGCGCGGCGccGGCg -3'
miRNA:   3'- -GUCu---CCGCGgGCCG-AUGUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 119998 0.77 0.228858
Target:  5'- uGGAGG-GCgCCGGCUACGCGGCc--- -3'
miRNA:   3'- gUCUCCgCG-GGCCGAUGUGCCGuuug -5'
23719 3' -58.2 NC_005261.1 + 118929 0.69 0.587195
Target:  5'- gCGGGcgcGGCGCCgcgCGGCUGgcCGCGGCGcACg -3'
miRNA:   3'- -GUCU---CCGCGG---GCCGAU--GUGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 118523 0.66 0.758376
Target:  5'- -cGAGGCGCCCuGCcccgccgACcccuGCGGCGcGCg -3'
miRNA:   3'- guCUCCGCGGGcCGa------UG----UGCCGUuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.