miRNA display CGI


Results 41 - 60 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 118377 0.68 0.648538
Target:  5'- -uGGGGCGCgCGGCccgagGCGCuGGCGGccGCg -3'
miRNA:   3'- guCUCCGCGgGCCGa----UGUG-CCGUU--UG- -5'
23719 3' -58.2 NC_005261.1 + 117901 0.68 0.689274
Target:  5'- cCAGAcgGGUGagCGGCUGCGCGG-GAACg -3'
miRNA:   3'- -GUCU--CCGCggGCCGAUGUGCCgUUUG- -5'
23719 3' -58.2 NC_005261.1 + 117673 0.69 0.628058
Target:  5'- -cGccGCGCCCGGCcgggccCGCGGCGAGg -3'
miRNA:   3'- guCucCGCGGGCCGau----GUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 117400 0.66 0.758376
Target:  5'- -cGGGGCGCCCGaCUuu-CGGCugGAGCu -3'
miRNA:   3'- guCUCCGCGGGCcGAuguGCCG--UUUG- -5'
23719 3' -58.2 NC_005261.1 + 113879 0.71 0.497751
Target:  5'- --cGGGUGCCaccuguagCGGCgACGCGGCGGGCg -3'
miRNA:   3'- gucUCCGCGG--------GCCGaUGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 113311 0.69 0.586178
Target:  5'- --cGGGCcuggGCCCGGCUgcgcgagaaggucGCGCGGCAcgGGCu -3'
miRNA:   3'- gucUCCG----CGGGCCGA-------------UGUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 111554 0.7 0.517173
Target:  5'- gCGGAccGCcuGCCCGGCcgACGCGGCAGAg -3'
miRNA:   3'- -GUCUc-CG--CGGGCCGa-UGUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 110454 0.66 0.767874
Target:  5'- --cGGGCGUuuGGgUGcCugGGCGGGCu -3'
miRNA:   3'- gucUCCGCGggCCgAU-GugCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 109783 0.67 0.729247
Target:  5'- --cGGGCGuCCCGGCcgcugcUGCgACGGCcGGCg -3'
miRNA:   3'- gucUCCGC-GGGCCG------AUG-UGCCGuUUG- -5'
23719 3' -58.2 NC_005261.1 + 109210 0.66 0.786499
Target:  5'- --cAGGCGCUCGuagGCGCGGCAcGCc -3'
miRNA:   3'- gucUCCGCGGGCcgaUGUGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 108742 0.73 0.389244
Target:  5'- gCGGcGGCGCCgCGGCgucCGCGGCGcGCc -3'
miRNA:   3'- -GUCuCCGCGG-GCCGau-GUGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 108293 0.66 0.795607
Target:  5'- -cGuuGCGCUCGcCUGCACGGCGucccaGACg -3'
miRNA:   3'- guCucCGCGGGCcGAUGUGCCGU-----UUG- -5'
23719 3' -58.2 NC_005261.1 + 108175 0.67 0.729247
Target:  5'- cCAG-GGCGCgCGGC--CGCGGCuccgGGCg -3'
miRNA:   3'- -GUCuCCGCGgGCCGauGUGCCGu---UUG- -5'
23719 3' -58.2 NC_005261.1 + 107698 0.75 0.297433
Target:  5'- gCGGGGGCGCCgccgaaCGucGCUGcCGCGGCAGGCg -3'
miRNA:   3'- -GUCUCCGCGG------GC--CGAU-GUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 107642 0.78 0.207444
Target:  5'- -cGA-GCGCCCGcGCUGCGCGcGCAAACu -3'
miRNA:   3'- guCUcCGCGGGC-CGAUGUGC-CGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 107379 0.66 0.777251
Target:  5'- -cGGGGCGCCCGcGUccacgaACGGCcaGAGCc -3'
miRNA:   3'- guCUCCGCGGGC-CGaug---UGCCG--UUUG- -5'
23719 3' -58.2 NC_005261.1 + 105948 0.66 0.786499
Target:  5'- -cGAGcGCGCCgucgauggccuCGGCgcccaGCGCGGCGucGACg -3'
miRNA:   3'- guCUC-CGCGG-----------GCCGa----UGUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 105109 0.66 0.758376
Target:  5'- gCGGGGGCuuGCCCGcGCggGCGCGGg---- -3'
miRNA:   3'- -GUCUCCG--CGGGC-CGa-UGUGCCguuug -5'
23719 3' -58.2 NC_005261.1 + 104200 0.71 0.478663
Target:  5'- gGGAcGGCGUCCaGGCgcucgcGCGCGGCGcGCa -3'
miRNA:   3'- gUCU-CCGCGGG-CCGa-----UGUGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 102782 0.66 0.758376
Target:  5'- -cGAGGCcucgcCCCGGCcgcgaGCGCGGCGc-- -3'
miRNA:   3'- guCUCCGc----GGGCCGa----UGUGCCGUuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.