miRNA display CGI


Results 61 - 80 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 102554 0.68 0.67914
Target:  5'- --cAGGCGCCCGGCggACACcGCc--- -3'
miRNA:   3'- gucUCCGCGGGCCGa-UGUGcCGuuug -5'
23719 3' -58.2 NC_005261.1 + 102363 0.69 0.628058
Target:  5'- gCGGAGcGCGCCucaaCGcGCUccaGCGCGGCGcGCa -3'
miRNA:   3'- -GUCUC-CGCGG----GC-CGA---UGUGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 101884 0.66 0.786499
Target:  5'- gCAG-GGCGCCCaGCcGCGCGcGCu--- -3'
miRNA:   3'- -GUCuCCGCGGGcCGaUGUGC-CGuuug -5'
23719 3' -58.2 NC_005261.1 + 100264 0.67 0.698355
Target:  5'- cCAGucGGCGCgCCGGUgGCgcacgaaGCGGCAGAa -3'
miRNA:   3'- -GUCu-CCGCG-GGCCGaUG-------UGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 99777 0.71 0.466451
Target:  5'- gAGAGGCgGCCCGGgUcccagucgcggcgcGgAUGGCGAACa -3'
miRNA:   3'- gUCUCCG-CGGGCCgA--------------UgUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 98207 0.79 0.157311
Target:  5'- gCAGcGGGCGCCgccaCGGCaGCGCGGCGGGCa -3'
miRNA:   3'- -GUC-UCCGCGG----GCCGaUGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 98009 0.66 0.786499
Target:  5'- gCGGGGGCGCUggCGGCgagGCuggagacgccGCGGUAcuGGCg -3'
miRNA:   3'- -GUCUCCGCGG--GCCGa--UG----------UGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 97847 0.73 0.380919
Target:  5'- gCGGcGGGCGCCgccgCGGCaGCGCGGCcGGCa -3'
miRNA:   3'- -GUC-UCCGCGG----GCCGaUGUGCCGuUUG- -5'
23719 3' -58.2 NC_005261.1 + 97746 0.75 0.276621
Target:  5'- gCAGGGGCggggcggGCUCGGCgGCGCGGCcGGCa -3'
miRNA:   3'- -GUCUCCG-------CGGGCCGaUGUGCCGuUUG- -5'
23719 3' -58.2 NC_005261.1 + 97224 0.7 0.56693
Target:  5'- uCGGAGGCgcuggcgccgGCCCGGCcgGCugGGUc-GCg -3'
miRNA:   3'- -GUCUCCG----------CGGGCCGa-UGugCCGuuUG- -5'
23719 3' -58.2 NC_005261.1 + 97125 0.75 0.311493
Target:  5'- cCGGAGGCGCCgCGGCcACGCucggaGGCGcuGGCg -3'
miRNA:   3'- -GUCUCCGCGG-GCCGaUGUG-----CCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 97083 0.7 0.556863
Target:  5'- uCGGAGGCG-CCGGCUGgGCcGgGGGCg -3'
miRNA:   3'- -GUCUCCGCgGGCCGAUgUGcCgUUUG- -5'
23719 3' -58.2 NC_005261.1 + 97027 0.68 0.637276
Target:  5'- -cGGGcGCGCCCGGCcGCccacauccacaggGCGGgGGGCg -3'
miRNA:   3'- guCUC-CGCGGGCCGaUG-------------UGCCgUUUG- -5'
23719 3' -58.2 NC_005261.1 + 96858 0.69 0.597379
Target:  5'- -cGGGGgGCUCGGgggGCGCGGguAGCg -3'
miRNA:   3'- guCUCCgCGGGCCga-UGUGCCguUUG- -5'
23719 3' -58.2 NC_005261.1 + 95761 0.71 0.469255
Target:  5'- cCGGGGGCGCCgggagccucgCGcGCUGCGcCGGCGcGCu -3'
miRNA:   3'- -GUCUCCGCGG----------GC-CGAUGU-GCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 93679 0.66 0.758376
Target:  5'- gCGGcGGCG-CCGGCgggGCGcCGGCGggUg -3'
miRNA:   3'- -GUCuCCGCgGGCCGa--UGU-GCCGUuuG- -5'
23719 3' -58.2 NC_005261.1 + 91685 0.66 0.755504
Target:  5'- cCGGAGacgacGCGCgccugcgacagCCGGCUGCaaggccggcucgccGCGGCGGGCu -3'
miRNA:   3'- -GUCUC-----CGCG-----------GGCCGAUG--------------UGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 91138 0.66 0.758376
Target:  5'- -cGAGGCcucagccgugccGCCCGGCgagugGCccggGCGGCAGc- -3'
miRNA:   3'- guCUCCG------------CGGGCCGa----UG----UGCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 90399 0.7 0.516195
Target:  5'- gCGGGgcuGGCGCCCGGCgcggacUACGCgacguucgacgugGGCGGGCg -3'
miRNA:   3'- -GUCU---CCGCGGGCCG------AUGUG-------------CCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 90207 0.71 0.497751
Target:  5'- gCGGGGGCGgCgGaGCgcccucGCGCGGCGGGCg -3'
miRNA:   3'- -GUCUCCGCgGgC-CGa-----UGUGCCGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.