Results 21 - 40 of 250 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 43636 | 0.74 | 0.326053 |
Target: 5'- --uGGGCGCCCGuGUgGCGCGGCGguGACg -3' miRNA: 3'- gucUCCGCGGGC-CGaUGUGCCGU--UUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 97125 | 0.75 | 0.311493 |
Target: 5'- cCGGAGGCGCCgCGGCcACGCucggaGGCGcuGGCg -3' miRNA: 3'- -GUCUCCGCGG-GCCGaUGUG-----CCGU--UUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 63460 | 0.76 | 0.24025 |
Target: 5'- -cGA-GCGCCCgcgagGGUUGCACGGCGAGCg -3' miRNA: 3'- guCUcCGCGGG-----CCGAUGUGCCGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 242 | 0.76 | 0.24025 |
Target: 5'- -cGAGcGgGCCCGGCUGCGgCGGCGGcuGCg -3' miRNA: 3'- guCUC-CgCGGGCCGAUGU-GCCGUU--UG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 119998 | 0.77 | 0.228858 |
Target: 5'- uGGAGG-GCgCCGGCUACGCGGCc--- -3' miRNA: 3'- gUCUCCgCG-GGCCGAUGUGCCGuuug -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 129711 | 0.77 | 0.223336 |
Target: 5'- cCGGAGGCagGCCCgccGGCUGCAgCGGCAGGg -3' miRNA: 3'- -GUCUCCG--CGGG---CCGAUGU-GCCGUUUg -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 107642 | 0.78 | 0.207444 |
Target: 5'- -cGA-GCGCCCGcGCUGCGCGcGCAAACu -3' miRNA: 3'- guCUcCGCGGGC-CGAUGUGC-CGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 134565 | 0.79 | 0.16553 |
Target: 5'- uGGGcGGCGCCgCGGCUGCGCagGGCGGGCc -3' miRNA: 3'- gUCU-CCGCGG-GCCGAUGUG--CCGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 98207 | 0.79 | 0.157311 |
Target: 5'- gCAGcGGGCGCCgccaCGGCaGCGCGGCGGGCa -3' miRNA: 3'- -GUC-UCCGCGG----GCCGaUGUGCCGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 126946 | 0.8 | 0.149462 |
Target: 5'- cCAGGGGCGCCgGGCgcggGgGCGGCAGcGCg -3' miRNA: 3'- -GUCUCCGCGGgCCGa---UgUGCCGUU-UG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 137925 | 0.76 | 0.24025 |
Target: 5'- -cGAGcGgGCCCGGCUGCGgCGGCGGcuGCg -3' miRNA: 3'- guCUC-CgCGGGCCGAUGU-GCCGUU--UG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 29400 | 0.76 | 0.246121 |
Target: 5'- -cGAGGCgGCCgCGcGCUACGCGGCGGccGCg -3' miRNA: 3'- guCUCCG-CGG-GC-CGAUGUGCCGUU--UG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 127764 | 0.75 | 0.297433 |
Target: 5'- gCGGcGGGCgcgaagacGCCCGGCUGCucgaGCGGCGGGCc -3' miRNA: 3'- -GUC-UCCG--------CGGGCCGAUG----UGCCGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 75571 | 0.75 | 0.297433 |
Target: 5'- -cGGGGCGCUgGGCggcgGCGCGGCGcuCg -3' miRNA: 3'- guCUCCGCGGgCCGa---UGUGCCGUuuG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 107698 | 0.75 | 0.297433 |
Target: 5'- gCGGGGGCGCCgccgaaCGucGCUGcCGCGGCAGGCg -3' miRNA: 3'- -GUCUCCGCGG------GC--CGAU-GUGCCGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 28767 | 0.75 | 0.277274 |
Target: 5'- cCGGGGGCGCCUGGgc-CGCGGCGcgGGCg -3' miRNA: 3'- -GUCUCCGCGGGCCgauGUGCCGU--UUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 97746 | 0.75 | 0.276621 |
Target: 5'- gCAGGGGCggggcggGCUCGGCgGCGCGGCcGGCa -3' miRNA: 3'- -GUCUCCG-------CGGGCCGaUGUGCCGuUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 39861 | 0.76 | 0.25822 |
Target: 5'- --cGGGCGCCCaGGC-ACACGGCcAGCa -3' miRNA: 3'- gucUCCGCGGG-CCGaUGUGCCGuUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 129531 | 0.76 | 0.25454 |
Target: 5'- -cGAGGCGCgCgGGCUACgccgcaaggugcaagACGGCGGGCg -3' miRNA: 3'- guCUCCGCG-GgCCGAUG---------------UGCCGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 53456 | 0.76 | 0.252111 |
Target: 5'- gGGAGGuCGCCgGGCgggACGCaGCAGGCg -3' miRNA: 3'- gUCUCC-GCGGgCCGa--UGUGcCGUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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