miRNA display CGI


Results 41 - 60 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 129711 0.77 0.223336
Target:  5'- cCGGAGGCagGCCCgccGGCUGCAgCGGCAGGg -3'
miRNA:   3'- -GUCUCCG--CGGG---CCGAUGU-GCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 107642 0.78 0.207444
Target:  5'- -cGA-GCGCCCGcGCUGCGCGcGCAAACu -3'
miRNA:   3'- guCUcCGCGGGC-CGAUGUGC-CGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 134565 0.79 0.16553
Target:  5'- uGGGcGGCGCCgCGGCUGCGCagGGCGGGCc -3'
miRNA:   3'- gUCU-CCGCGG-GCCGAUGUG--CCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 98207 0.79 0.157311
Target:  5'- gCAGcGGGCGCCgccaCGGCaGCGCGGCGGGCa -3'
miRNA:   3'- -GUC-UCCGCGG----GCCGaUGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 126946 0.8 0.149462
Target:  5'- cCAGGGGCGCCgGGCgcggGgGCGGCAGcGCg -3'
miRNA:   3'- -GUCUCCGCGGgCCGa---UgUGCCGUU-UG- -5'
23719 3' -58.2 NC_005261.1 + 97746 0.75 0.276621
Target:  5'- gCAGGGGCggggcggGCUCGGCgGCGCGGCcGGCa -3'
miRNA:   3'- -GUCUCCG-------CGGGCCGaUGUGCCGuUUG- -5'
23719 3' -58.2 NC_005261.1 + 28767 0.75 0.277274
Target:  5'- cCGGGGGCGCCUGGgc-CGCGGCGcgGGCg -3'
miRNA:   3'- -GUCUCCGCGGGCCgauGUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 81368 0.74 0.356667
Target:  5'- gGGGGGCGCCgGGCUcGCugGGgGcGCc -3'
miRNA:   3'- gUCUCCGCGGgCCGA-UGugCCgUuUG- -5'
23719 3' -58.2 NC_005261.1 + 68710 0.74 0.356667
Target:  5'- aCGGcGGCG-CCGGCccucACGCGGCGGGCg -3'
miRNA:   3'- -GUCuCCGCgGGCCGa---UGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 3531 0.74 0.348827
Target:  5'- gCGGcGGcCGCCuCGGCgcgcaGCGCGGCGGGCg -3'
miRNA:   3'- -GUCuCC-GCGG-GCCGa----UGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 56817 0.74 0.348827
Target:  5'- aCGGuguuccuGGUGCCgCGGCgGCACGGCAAGa -3'
miRNA:   3'- -GUCu------CCGCGG-GCCGaUGUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 134998 0.74 0.341111
Target:  5'- -cGGGGCGCCCcug-GCGCGGCGGGCc -3'
miRNA:   3'- guCUCCGCGGGccgaUGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 131750 0.74 0.341111
Target:  5'- gCGGAcGGCaCgCCGGCcgGCGCGGCGGGCg -3'
miRNA:   3'- -GUCU-CCGcG-GGCCGa-UGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 78149 0.74 0.326053
Target:  5'- ---cGGCGCCCGccGCUGC-CGGCGGGCc -3'
miRNA:   3'- gucuCCGCGGGC--CGAUGuGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 83361 0.74 0.326053
Target:  5'- aGGaAGGCGUCCacgucGGCgaGCGCGGCGAGCg -3'
miRNA:   3'- gUC-UCCGCGGG-----CCGa-UGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 43636 0.74 0.326053
Target:  5'- --uGGGCGCCCGuGUgGCGCGGCGguGACg -3'
miRNA:   3'- gucUCCGCGGGC-CGaUGUGCCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 97125 0.75 0.311493
Target:  5'- cCGGAGGCGCCgCGGCcACGCucggaGGCGcuGGCg -3'
miRNA:   3'- -GUCUCCGCGG-GCCGaUGUG-----CCGU--UUG- -5'
23719 3' -58.2 NC_005261.1 + 127764 0.75 0.297433
Target:  5'- gCGGcGGGCgcgaagacGCCCGGCUGCucgaGCGGCGGGCc -3'
miRNA:   3'- -GUC-UCCG--------CGGGCCGAUG----UGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 75571 0.75 0.297433
Target:  5'- -cGGGGCGCUgGGCggcgGCGCGGCGcuCg -3'
miRNA:   3'- guCUCCGCGGgCCGa---UGUGCCGUuuG- -5'
23719 3' -58.2 NC_005261.1 + 107698 0.75 0.297433
Target:  5'- gCGGGGGCGCCgccgaaCGucGCUGcCGCGGCAGGCg -3'
miRNA:   3'- -GUCUCCGCGG------GC--CGAU-GUGCCGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.