Results 61 - 80 of 250 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23719 | 3' | -58.2 | NC_005261.1 | + | 97125 | 0.75 | 0.311493 |
Target: 5'- cCGGAGGCGCCgCGGCcACGCucggaGGCGcuGGCg -3' miRNA: 3'- -GUCUCCGCGG-GCCGaUGUG-----CCGU--UUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 43636 | 0.74 | 0.326053 |
Target: 5'- --uGGGCGCCCGuGUgGCGCGGCGguGACg -3' miRNA: 3'- gucUCCGCGGGC-CGaUGUGCCGU--UUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 129023 | 0.73 | 0.364629 |
Target: 5'- ---cGGCuGCCCGuagcCUACGCGGCAGACg -3' miRNA: 3'- gucuCCG-CGGGCc---GAUGUGCCGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 60274 | 0.73 | 0.371087 |
Target: 5'- aAGAGGCGCCCGGgguccgccccCGCGGCccGCa -3' miRNA: 3'- gUCUCCGCGGGCCgau-------GUGCCGuuUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 45990 | 0.73 | 0.372714 |
Target: 5'- gCAGcacGGGCGCCauGUgUGCGCGGCAGGCg -3' miRNA: 3'- -GUC---UCCGCGGgcCG-AUGUGCCGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 97847 | 0.73 | 0.380919 |
Target: 5'- gCGGcGGGCGCCgccgCGGCaGCGCGGCcGGCa -3' miRNA: 3'- -GUC-UCCGCGG----GCCGaUGUGCCGuUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 88149 | 0.73 | 0.389244 |
Target: 5'- gCGGGGGCGcCCCGGCcGCGCaGcCGGGCc -3' miRNA: 3'- -GUCUCCGC-GGGCCGaUGUGcC-GUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 108742 | 0.73 | 0.389244 |
Target: 5'- gCGGcGGCGCCgCGGCgucCGCGGCGcGCc -3' miRNA: 3'- -GUCuCCGCGG-GCCGau-GUGCCGUuUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 71083 | 0.73 | 0.397688 |
Target: 5'- -cGGGGCGUCCgGGCccgagaaggcgUACACGGCGcGCa -3' miRNA: 3'- guCUCCGCGGG-CCG-----------AUGUGCCGUuUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 3850 | 0.72 | 0.414924 |
Target: 5'- gCAGcGGCGCCgGcGCcGCGCGGCcGGCg -3' miRNA: 3'- -GUCuCCGCGGgC-CGaUGUGCCGuUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 43992 | 0.74 | 0.356667 |
Target: 5'- uCGGAcguGGacaccucccaGCCCGGCUucgGCGCGGCGGGCg -3' miRNA: 3'- -GUCU---CCg---------CGGGCCGA---UGUGCCGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 5334 | 0.74 | 0.356667 |
Target: 5'- gAGAGGCGCgggucggccagCCGGCUGguCGGUGGAUa -3' miRNA: 3'- gUCUCCGCG-----------GGCCGAUguGCCGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 83361 | 0.74 | 0.326053 |
Target: 5'- aGGaAGGCGUCCacgucGGCgaGCGCGGCGAGCg -3' miRNA: 3'- gUC-UCCGCGGG-----CCGa-UGUGCCGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 78149 | 0.74 | 0.326053 |
Target: 5'- ---cGGCGCCCGccGCUGC-CGGCGGGCc -3' miRNA: 3'- gucuCCGCGGGC--CGAUGuGCCGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 131750 | 0.74 | 0.341111 |
Target: 5'- gCGGAcGGCaCgCCGGCcgGCGCGGCGGGCg -3' miRNA: 3'- -GUCU-CCGcG-GGCCGa-UGUGCCGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 134998 | 0.74 | 0.341111 |
Target: 5'- -cGGGGCGCCCcug-GCGCGGCGGGCc -3' miRNA: 3'- guCUCCGCGGGccgaUGUGCCGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 56817 | 0.74 | 0.348827 |
Target: 5'- aCGGuguuccuGGUGCCgCGGCgGCACGGCAAGa -3' miRNA: 3'- -GUCu------CCGCGG-GCCGaUGUGCCGUUUg -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 3531 | 0.74 | 0.348827 |
Target: 5'- gCGGcGGcCGCCuCGGCgcgcaGCGCGGCGGGCg -3' miRNA: 3'- -GUCuCC-GCGG-GCCGa----UGUGCCGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 68710 | 0.74 | 0.356667 |
Target: 5'- aCGGcGGCG-CCGGCccucACGCGGCGGGCg -3' miRNA: 3'- -GUCuCCGCgGGCCGa---UGUGCCGUUUG- -5' |
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23719 | 3' | -58.2 | NC_005261.1 | + | 81368 | 0.74 | 0.356667 |
Target: 5'- gGGGGGCGCCgGGCUcGCugGGgGcGCc -3' miRNA: 3'- gUCUCCGCGGgCCGA-UGugCCgUuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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