miRNA display CGI


Results 101 - 120 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 3' -58.2 NC_005261.1 + 95761 0.71 0.469255
Target:  5'- cCGGGGGCGCCgggagccucgCGcGCUGCGcCGGCGcGCu -3'
miRNA:   3'- -GUCUCCGCGG----------GC-CGAUGU-GCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 104200 0.71 0.478663
Target:  5'- gGGAcGGCGUCCaGGCgcucgcGCGCGGCGcGCa -3'
miRNA:   3'- gUCU-CCGCGGG-CCGa-----UGUGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 32910 0.71 0.478663
Target:  5'- aAGGGGCGCgCGuGggGgGCGGCGGGCg -3'
miRNA:   3'- gUCUCCGCGgGC-CgaUgUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 33597 0.71 0.478663
Target:  5'- cCAGGGGCgGCgCCGGCgcGgGCGGCGGGg -3'
miRNA:   3'- -GUCUCCG-CG-GGCCGa-UgUGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 132559 0.71 0.48721
Target:  5'- -cGAGGCGCaguaCGGCUGCGaagacguCGGCGcGCc -3'
miRNA:   3'- guCUCCGCGg---GCCGAUGU-------GCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 75845 0.72 0.43261
Target:  5'- gAGGGGCGCgCGGCgccgACGgCGGCcccGACg -3'
miRNA:   3'- gUCUCCGCGgGCCGa---UGU-GCCGu--UUG- -5'
23719 3' -58.2 NC_005261.1 + 31431 0.72 0.43261
Target:  5'- gGGAGGCGCUggCGGCgccGCcCGGCGAGg -3'
miRNA:   3'- gUCUCCGCGG--GCCGa--UGuGCCGUUUg -5'
23719 3' -58.2 NC_005261.1 + 129023 0.73 0.364629
Target:  5'- ---cGGCuGCCCGuagcCUACGCGGCAGACg -3'
miRNA:   3'- gucuCCG-CGGGCc---GAUGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 60274 0.73 0.371087
Target:  5'- aAGAGGCGCCCGGgguccgccccCGCGGCccGCa -3'
miRNA:   3'- gUCUCCGCGGGCCgau-------GUGCCGuuUG- -5'
23719 3' -58.2 NC_005261.1 + 45990 0.73 0.372714
Target:  5'- gCAGcacGGGCGCCauGUgUGCGCGGCAGGCg -3'
miRNA:   3'- -GUC---UCCGCGGgcCG-AUGUGCCGUUUG- -5'
23719 3' -58.2 NC_005261.1 + 97847 0.73 0.380919
Target:  5'- gCGGcGGGCGCCgccgCGGCaGCGCGGCcGGCa -3'
miRNA:   3'- -GUC-UCCGCGG----GCCGaUGUGCCGuUUG- -5'
23719 3' -58.2 NC_005261.1 + 88149 0.73 0.389244
Target:  5'- gCGGGGGCGcCCCGGCcGCGCaGcCGGGCc -3'
miRNA:   3'- -GUCUCCGC-GGGCCGaUGUGcC-GUUUG- -5'
23719 3' -58.2 NC_005261.1 + 108742 0.73 0.389244
Target:  5'- gCGGcGGCGCCgCGGCgucCGCGGCGcGCc -3'
miRNA:   3'- -GUCuCCGCGG-GCCGau-GUGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 71083 0.73 0.397688
Target:  5'- -cGGGGCGUCCgGGCccgagaaggcgUACACGGCGcGCa -3'
miRNA:   3'- guCUCCGCGGG-CCG-----------AUGUGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 3850 0.72 0.414924
Target:  5'- gCAGcGGCGCCgGcGCcGCGCGGCcGGCg -3'
miRNA:   3'- -GUCuCCGCGGgC-CGaUGUGCCGuUUG- -5'
23719 3' -58.2 NC_005261.1 + 81485 0.72 0.423712
Target:  5'- cCAGAGcaGgGCCgCGGCUaGCGCGGCGcGCg -3'
miRNA:   3'- -GUCUC--CgCGG-GCCGA-UGUGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 76869 0.72 0.423712
Target:  5'- ---uGGCGCCCGGCgaggagGCcgACGGCAcGCu -3'
miRNA:   3'- gucuCCGCGGGCCGa-----UG--UGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 47451 0.72 0.427258
Target:  5'- --cAGGCGCCCGGCccgcuugcgcggggGCugGGCGAu- -3'
miRNA:   3'- gucUCCGCGGGCCGa-------------UGugCCGUUug -5'
23719 3' -58.2 NC_005261.1 + 136590 0.72 0.430822
Target:  5'- gCAGAGaCGCCCGGCgcagcguggaGCGGCGcGCg -3'
miRNA:   3'- -GUCUCcGCGGGCCGaug-------UGCCGUuUG- -5'
23719 3' -58.2 NC_005261.1 + 134188 0.72 0.43261
Target:  5'- gCGGAGG-GCCUGGCgcgGCuCGGCGcGCg -3'
miRNA:   3'- -GUCUCCgCGGGCCGa--UGuGCCGUuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.