miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23719 5' -56.8 NC_005261.1 + 118133 0.66 0.866074
Target:  5'- cGCGCcgCUCGGcCGgcUCgcgcaGACGCUGg- -3'
miRNA:   3'- -CGCGa-GAGCC-GCauGGa----CUGCGACaa -5'
23719 5' -56.8 NC_005261.1 + 133890 0.66 0.858423
Target:  5'- uGCGCaagCccgCGGCGcgcugcugGCCUGGCuGCUGUa -3'
miRNA:   3'- -CGCGa--Ga--GCCGCa-------UGGACUG-CGACAa -5'
23719 5' -56.8 NC_005261.1 + 15380 0.66 0.858423
Target:  5'- gGCGCcCUCGGCGccgccgucgaUGCC-GACGCg--- -3'
miRNA:   3'- -CGCGaGAGCCGC----------AUGGaCUGCGacaa -5'
23719 5' -56.8 NC_005261.1 + 106394 0.66 0.858423
Target:  5'- cCGCUgUCGGCGacauCCgcgcGGCGCUGc- -3'
miRNA:   3'- cGCGAgAGCCGCau--GGa---CUGCGACaa -5'
23719 5' -56.8 NC_005261.1 + 75587 0.66 0.842506
Target:  5'- gGCGCggcgCUCGcGCGcGCCgcgGACGCg--- -3'
miRNA:   3'- -CGCGa---GAGC-CGCaUGGa--CUGCGacaa -5'
23719 5' -56.8 NC_005261.1 + 121471 0.66 0.834253
Target:  5'- -aGCUcCUCGGCGUACCg---GCUGc- -3'
miRNA:   3'- cgCGA-GAGCCGCAUGGacugCGACaa -5'
23719 5' -56.8 NC_005261.1 + 3808 0.66 0.834253
Target:  5'- cGCGCagccgCUCGcGCGcUGCCgcgggcccgGGCGCUGg- -3'
miRNA:   3'- -CGCGa----GAGC-CGC-AUGGa--------CUGCGACaa -5'
23719 5' -56.8 NC_005261.1 + 30262 0.66 0.83258
Target:  5'- cGCGCggcgCGGCGgcccgcgcgcccGCCUgGACGCUGg- -3'
miRNA:   3'- -CGCGaga-GCCGCa-----------UGGA-CUGCGACaa -5'
23719 5' -56.8 NC_005261.1 + 46382 0.67 0.817196
Target:  5'- uCGCUCUCGGCGccgGCCccgucgccGACGgUGg- -3'
miRNA:   3'- cGCGAGAGCCGCa--UGGa-------CUGCgACaa -5'
23719 5' -56.8 NC_005261.1 + 118085 0.67 0.817196
Target:  5'- cGCGCUCgucugcUGGCGgcccGCCgcgcaGACGCUGc- -3'
miRNA:   3'- -CGCGAGa-----GCCGCa---UGGa----CUGCGACaa -5'
23719 5' -56.8 NC_005261.1 + 103915 0.67 0.816324
Target:  5'- cGCGCcgccaggUCgggcgCGGCGUcuGCCaGACGCUGc- -3'
miRNA:   3'- -CGCG-------AGa----GCCGCA--UGGaCUGCGACaa -5'
23719 5' -56.8 NC_005261.1 + 75363 0.67 0.808407
Target:  5'- aGCaGCUgC-CGGCGUACCUGgACGCccUGg- -3'
miRNA:   3'- -CG-CGA-GaGCCGCAUGGAC-UGCG--ACaa -5'
23719 5' -56.8 NC_005261.1 + 118348 0.67 0.799456
Target:  5'- gGCuGCUcCUCGGCcucucgGCCgGGCGCUGg- -3'
miRNA:   3'- -CG-CGA-GAGCCGca----UGGaCUGCGACaa -5'
23719 5' -56.8 NC_005261.1 + 37161 0.67 0.790352
Target:  5'- aGCGCUCgCGcGCGcuugcGCCUGgGCGCUGc- -3'
miRNA:   3'- -CGCGAGaGC-CGCa----UGGAC-UGCGACaa -5'
23719 5' -56.8 NC_005261.1 + 130472 0.67 0.781103
Target:  5'- aGCgGCUCgCGGCGUGCCUcGGCGg---- -3'
miRNA:   3'- -CG-CGAGaGCCGCAUGGA-CUGCgacaa -5'
23719 5' -56.8 NC_005261.1 + 135767 0.67 0.781103
Target:  5'- uGCGCUC-CGGCGcagagcGCgUGcCGCUGUc -3'
miRNA:   3'- -CGCGAGaGCCGCa-----UGgACuGCGACAa -5'
23719 5' -56.8 NC_005261.1 + 77045 0.67 0.775488
Target:  5'- cGCGCggccCUCGGCGaccgcgccuggccggUGCCgcgcgaGGCGCUGg- -3'
miRNA:   3'- -CGCGa---GAGCCGC---------------AUGGa-----CUGCGACaa -5'
23719 5' -56.8 NC_005261.1 + 74502 0.67 0.771719
Target:  5'- gGCGCUCUucggggCGGCGccgggGCCaUGGCGCUu-- -3'
miRNA:   3'- -CGCGAGA------GCCGCa----UGG-ACUGCGAcaa -5'
23719 5' -56.8 NC_005261.1 + 32157 0.68 0.756445
Target:  5'- cGCGCcgCUgcggcCGGUGUACCUGgccugcgggcggcgcGCGCUGg- -3'
miRNA:   3'- -CGCGa-GA-----GCCGCAUGGAC---------------UGCGACaa -5'
23719 5' -56.8 NC_005261.1 + 50826 0.68 0.752581
Target:  5'- cGCGCggCUUGGCGccgcgAgCUGGCGcCUGUg -3'
miRNA:   3'- -CGCGa-GAGCCGCa----UgGACUGC-GACAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.