Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23719 | 5' | -56.8 | NC_005261.1 | + | 3808 | 0.66 | 0.834253 |
Target: 5'- cGCGCagccgCUCGcGCGcUGCCgcgggcccgGGCGCUGg- -3' miRNA: 3'- -CGCGa----GAGC-CGC-AUGGa--------CUGCGACaa -5' |
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23719 | 5' | -56.8 | NC_005261.1 | + | 15380 | 0.66 | 0.858423 |
Target: 5'- gGCGCcCUCGGCGccgccgucgaUGCC-GACGCg--- -3' miRNA: 3'- -CGCGaGAGCCGC----------AUGGaCUGCGacaa -5' |
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23719 | 5' | -56.8 | NC_005261.1 | + | 19073 | 0.73 | 0.452599 |
Target: 5'- cGCgGCUCUCGGCGcgugcuUGCgUGGCGUUGg- -3' miRNA: 3'- -CG-CGAGAGCCGC------AUGgACUGCGACaa -5' |
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23719 | 5' | -56.8 | NC_005261.1 | + | 30262 | 0.66 | 0.83258 |
Target: 5'- cGCGCggcgCGGCGgcccgcgcgcccGCCUgGACGCUGg- -3' miRNA: 3'- -CGCGaga-GCCGCa-----------UGGA-CUGCGACaa -5' |
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23719 | 5' | -56.8 | NC_005261.1 | + | 32157 | 0.68 | 0.756445 |
Target: 5'- cGCGCcgCUgcggcCGGUGUACCUGgccugcgggcggcgcGCGCUGg- -3' miRNA: 3'- -CGCGa-GA-----GCCGCAUGGAC---------------UGCGACaa -5' |
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23719 | 5' | -56.8 | NC_005261.1 | + | 37161 | 0.67 | 0.790352 |
Target: 5'- aGCGCUCgCGcGCGcuugcGCCUGgGCGCUGc- -3' miRNA: 3'- -CGCGAGaGC-CGCa----UGGAC-UGCGACaa -5' |
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23719 | 5' | -56.8 | NC_005261.1 | + | 46382 | 0.67 | 0.817196 |
Target: 5'- uCGCUCUCGGCGccgGCCccgucgccGACGgUGg- -3' miRNA: 3'- cGCGAGAGCCGCa--UGGa-------CUGCgACaa -5' |
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23719 | 5' | -56.8 | NC_005261.1 | + | 50826 | 0.68 | 0.752581 |
Target: 5'- cGCGCggCUUGGCGccgcgAgCUGGCGcCUGUg -3' miRNA: 3'- -CGCGa-GAGCCGCa----UgGACUGC-GACAa -5' |
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23719 | 5' | -56.8 | NC_005261.1 | + | 51008 | 0.72 | 0.539488 |
Target: 5'- gGCGCggcgggagCUCGGCGagcgccACCcGGCGCUGUUc -3' miRNA: 3'- -CGCGa-------GAGCCGCa-----UGGaCUGCGACAA- -5' |
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23719 | 5' | -56.8 | NC_005261.1 | + | 74502 | 0.67 | 0.771719 |
Target: 5'- gGCGCUCUucggggCGGCGccgggGCCaUGGCGCUu-- -3' miRNA: 3'- -CGCGAGA------GCCGCa----UGG-ACUGCGAcaa -5' |
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23719 | 5' | -56.8 | NC_005261.1 | + | 75363 | 0.67 | 0.808407 |
Target: 5'- aGCaGCUgC-CGGCGUACCUGgACGCccUGg- -3' miRNA: 3'- -CG-CGA-GaGCCGCAUGGAC-UGCG--ACaa -5' |
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23719 | 5' | -56.8 | NC_005261.1 | + | 75587 | 0.66 | 0.842506 |
Target: 5'- gGCGCggcgCUCGcGCGcGCCgcgGACGCg--- -3' miRNA: 3'- -CGCGa---GAGC-CGCaUGGa--CUGCGacaa -5' |
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23719 | 5' | -56.8 | NC_005261.1 | + | 77045 | 0.67 | 0.775488 |
Target: 5'- cGCGCggccCUCGGCGaccgcgccuggccggUGCCgcgcgaGGCGCUGg- -3' miRNA: 3'- -CGCGa---GAGCCGC---------------AUGGa-----CUGCGACaa -5' |
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23719 | 5' | -56.8 | NC_005261.1 | + | 94026 | 0.68 | 0.72309 |
Target: 5'- aGCGCaccuUCUCGGCG-GCCcGGCGCg--- -3' miRNA: 3'- -CGCG----AGAGCCGCaUGGaCUGCGacaa -5' |
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23719 | 5' | -56.8 | NC_005261.1 | + | 103915 | 0.67 | 0.816324 |
Target: 5'- cGCGCcgccaggUCgggcgCGGCGUcuGCCaGACGCUGc- -3' miRNA: 3'- -CGCG-------AGa----GCCGCA--UGGaCUGCGACaa -5' |
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23719 | 5' | -56.8 | NC_005261.1 | + | 106394 | 0.66 | 0.858423 |
Target: 5'- cCGCUgUCGGCGacauCCgcgcGGCGCUGc- -3' miRNA: 3'- cGCGAgAGCCGCau--GGa---CUGCGACaa -5' |
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23719 | 5' | -56.8 | NC_005261.1 | + | 110107 | 0.71 | 0.579953 |
Target: 5'- aGCGCcC-CGGCGcgcccguCCUGACGCUGa- -3' miRNA: 3'- -CGCGaGaGCCGCau-----GGACUGCGACaa -5' |
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23719 | 5' | -56.8 | NC_005261.1 | + | 111923 | 0.68 | 0.742845 |
Target: 5'- uGCGCgCUCGGCcUGCagucGGCGCUGa- -3' miRNA: 3'- -CGCGaGAGCCGcAUGga--CUGCGACaa -5' |
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23719 | 5' | -56.8 | NC_005261.1 | + | 112100 | 0.7 | 0.61072 |
Target: 5'- uGCGCggugUUCaacGCGUACCUGacgGCGCUGUa -3' miRNA: 3'- -CGCGa---GAGc--CGCAUGGAC---UGCGACAa -5' |
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23719 | 5' | -56.8 | NC_005261.1 | + | 117267 | 0.69 | 0.672475 |
Target: 5'- cGCGcCUCgaggaCGGCGaGCCUGGCGCcGa- -3' miRNA: 3'- -CGC-GAGa----GCCGCaUGGACUGCGaCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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