miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2372 3' -54 NC_001416.1 + 5387 1.1 0.000906
Target:  5'- uGACGUUACUGACGUGGUGCCAGCGACg -3'
miRNA:   3'- -CUGCAAUGACUGCACCACGGUCGCUG- -5'
2372 3' -54 NC_001416.1 + 5992 0.71 0.419927
Target:  5'- gGAUGUgcuCUGGCcggaGGcUGCCAGCGACg -3'
miRNA:   3'- -CUGCAau-GACUGca--CC-ACGGUCGCUG- -5'
2372 3' -54 NC_001416.1 + 9226 0.7 0.469894
Target:  5'- aGGCGcUGCUGGCGUGGUuuaauGaaGGCGAUa -3'
miRNA:   3'- -CUGCaAUGACUGCACCA-----CggUCGCUG- -5'
2372 3' -54 NC_001416.1 + 14593 0.68 0.588845
Target:  5'- cGACGggGCUGuAUcaGGUGCCguugucAGCGGCa -3'
miRNA:   3'- -CUGCaaUGAC-UGcaCCACGG------UCGCUG- -5'
2372 3' -54 NC_001416.1 + 22174 0.67 0.645053
Target:  5'- -cCGUcuaUGACGUGGcuuCCGGCGACg -3'
miRNA:   3'- cuGCAaugACUGCACCac-GGUCGCUG- -5'
2372 3' -54 NC_001416.1 + 15864 0.66 0.744452
Target:  5'- cGAUGuUUGCaGACGUaauGGUGCgGGUGAUc -3'
miRNA:   3'- -CUGC-AAUGaCUGCA---CCACGgUCGCUG- -5'
2372 3' -54 NC_001416.1 + 4539 0.66 0.711952
Target:  5'- ------cCUGACGgaugcGGUGuCCGGCGACa -3'
miRNA:   3'- cugcaauGACUGCa----CCAC-GGUCGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.