miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2372 5' -62.3 NC_001416.1 + 21295 0.69 0.207444
Target:  5'- uGAugGCCAcGgGauCGGCGCAccuGCCGGAa -3'
miRNA:   3'- uCUugCGGU-CgC--GCCGCGU---CGGCCUg -5'
2372 5' -62.3 NC_001416.1 + 19233 0.67 0.258754
Target:  5'- uGAGaGCCuGCGUGGaCGUuaugugagcgugauGGCCGGACc -3'
miRNA:   3'- uCUUgCGGuCGCGCC-GCG--------------UCGGCCUG- -5'
2372 5' -62.3 NC_001416.1 + 18503 0.67 0.260696
Target:  5'- --cGCGCCAGCGUGaaaGCAGUgUGGACu -3'
miRNA:   3'- ucuUGCGGUCGCGCcg-CGUCG-GCCUG- -5'
2372 5' -62.3 NC_001416.1 + 16961 0.66 0.294832
Target:  5'- cGGugGCguGUGCuGGCGguGaacagccagacCCGGACg -3'
miRNA:   3'- uCUugCGguCGCG-CCGCguC-----------GGCCUG- -5'
2372 5' -62.3 NC_001416.1 + 16873 0.71 0.15126
Target:  5'- uGGAUuUCAGCGuCGGCGCAGaaGGGCu -3'
miRNA:   3'- uCUUGcGGUCGC-GCCGCGUCggCCUG- -5'
2372 5' -62.3 NC_001416.1 + 14610 0.66 0.302063
Target:  5'- ---gUGCCGuugucaGCGGCaCAGCCGGGCg -3'
miRNA:   3'- ucuuGCGGUcg----CGCCGcGUCGGCCUG- -5'
2372 5' -62.3 NC_001416.1 + 14158 0.68 0.247971
Target:  5'- cGAuguGCGCCAGCggagucguGCGGCuucgugguaaGCAcGCCGGAg -3'
miRNA:   3'- uCU---UGCGGUCG--------CGCCG----------CGU-CGGCCUg -5'
2372 5' -62.3 NC_001416.1 + 13459 0.68 0.229851
Target:  5'- cGGAGCagucgGCCAGCGUGGUGCu-CUGGGa -3'
miRNA:   3'- -UCUUG-----CGGUCGCGCCGCGucGGCCUg -5'
2372 5' -62.3 NC_001416.1 + 12184 0.79 0.036533
Target:  5'- aGGAGCGCCugaacGCGCuGGCGCAGCaggCGGAUa -3'
miRNA:   3'- -UCUUGCGGu----CGCG-CCGCGUCG---GCCUG- -5'
2372 5' -62.3 NC_001416.1 + 6015 0.75 0.07621
Target:  5'- uAGAACGUCAGCGUGGUGCuGGuCUGGuCa -3'
miRNA:   3'- -UCUUGCGGUCGCGCCGCG-UC-GGCCuG- -5'
2372 5' -62.3 NC_001416.1 + 5421 1.09 0.000153
Target:  5'- gAGAACGCCAGCGCGGCGCAGCCGGACg -3'
miRNA:   3'- -UCUUGCGGUCGCGCCGCGUCGGCCUG- -5'
2372 5' -62.3 NC_001416.1 + 4754 0.66 0.294832
Target:  5'- -cAGCGCCcGCGUccGGCugaccaGCGuGCCGGACa -3'
miRNA:   3'- ucUUGCGGuCGCG--CCG------CGU-CGGCCUG- -5'
2372 5' -62.3 NC_001416.1 + 4693 0.67 0.260696
Target:  5'- cGGACGCgGGCGC--UGCAGCCGuACu -3'
miRNA:   3'- uCUUGCGgUCGCGccGCGUCGGCcUG- -5'
2372 5' -62.3 NC_001416.1 + 3340 0.66 0.311667
Target:  5'- cGGAugGUCAGCccgaagcgcaucaGCaacccgaacaauaccGGCGaCAGCCGGAa -3'
miRNA:   3'- -UCUugCGGUCG-------------CG---------------CCGC-GUCGGCCUg -5'
2372 5' -62.3 NC_001416.1 + 3171 0.68 0.247971
Target:  5'- cAGAuaGCGCCAGCuugGGCGaugacugAGCCGGAa -3'
miRNA:   3'- -UCU--UGCGGUCGcg-CCGCg------UCGGCCUg -5'
2372 5' -62.3 NC_001416.1 + 442 0.67 0.280775
Target:  5'- cGAACGCCAucgacuuaCGCGuGCGCAgGCC-GACg -3'
miRNA:   3'- uCUUGCGGUc-------GCGC-CGCGU-CGGcCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.