miRNA display CGI


Results 1 - 20 of 276 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23720 3' -59.8 NC_005261.1 + 23706 0.66 0.761602
Target:  5'- gCCCGCccggucggguggcaAGCgGGUGGCCgcgccgaggcgcgUCCGgGAGGg -3'
miRNA:   3'- -GGGUG--------------UCG-CCGCCGGa------------AGGCgCUUCa -5'
23720 3' -59.8 NC_005261.1 + 34929 0.66 0.758809
Target:  5'- gCCACgcgGGgGGCGGCCgg-CGCGAcccGGg -3'
miRNA:   3'- gGGUG---UCgCCGCCGGaagGCGCU---UCa -5'
23720 3' -59.8 NC_005261.1 + 1716 0.66 0.758809
Target:  5'- aCUCGC-GCGGCGGCaCgggcaCCGCGGu-- -3'
miRNA:   3'- -GGGUGuCGCCGCCG-Gaa---GGCGCUuca -5'
23720 3' -59.8 NC_005261.1 + 132727 0.66 0.758809
Target:  5'- cCUCAUuGCGGCGGCC--CCGCa---- -3'
miRNA:   3'- -GGGUGuCGCCGCCGGaaGGCGcuuca -5'
23720 3' -59.8 NC_005261.1 + 29558 0.66 0.758809
Target:  5'- aCCUGCAGCuGGCGcGCCUgCUGCa---- -3'
miRNA:   3'- -GGGUGUCG-CCGC-CGGAaGGCGcuuca -5'
23720 3' -59.8 NC_005261.1 + 18522 0.66 0.758809
Target:  5'- gCCCGCGucaauGaCGGCGGCgUcCCGCGGc-- -3'
miRNA:   3'- -GGGUGU-----C-GCCGCCGgAaGGCGCUuca -5'
23720 3' -59.8 NC_005261.1 + 73910 0.66 0.758809
Target:  5'- aCCUGCAGagcCGGCGGCCcgaCUGCGu-GUg -3'
miRNA:   3'- -GGGUGUC---GCCGCCGGaa-GGCGCuuCA- -5'
23720 3' -59.8 NC_005261.1 + 42202 0.66 0.758809
Target:  5'- cUCCACGGCGccgcGCGGgCgccccgCCGCGAGc- -3'
miRNA:   3'- -GGGUGUCGC----CGCCgGaa----GGCGCUUca -5'
23720 3' -59.8 NC_005261.1 + 115093 0.66 0.758809
Target:  5'- cCCCAuCAGCGuGuCGGCCU-CgGCGgcGc -3'
miRNA:   3'- -GGGU-GUCGC-C-GCCGGAaGgCGCuuCa -5'
23720 3' -59.8 NC_005261.1 + 31118 0.66 0.74943
Target:  5'- gCCGCcGaCGGCGGCUUccgCCGCGugccgcccgggGAGUa -3'
miRNA:   3'- gGGUGuC-GCCGCCGGAa--GGCGC-----------UUCA- -5'
23720 3' -59.8 NC_005261.1 + 56001 0.66 0.74943
Target:  5'- aCCGCGGCGGgGGCgggg-GCGggGa -3'
miRNA:   3'- gGGUGUCGCCgCCGgaaggCGCuuCa -5'
23720 3' -59.8 NC_005261.1 + 5442 0.66 0.74943
Target:  5'- gCCGCGGCGGCGGCaaca-GCGc--- -3'
miRNA:   3'- gGGUGUCGCCGCCGgaaggCGCuuca -5'
23720 3' -59.8 NC_005261.1 + 38068 0.66 0.74943
Target:  5'- gCCCACGGCc-UGGCCUUcagcgugaaCCGCGgcGUu -3'
miRNA:   3'- -GGGUGUCGccGCCGGAA---------GGCGCuuCA- -5'
23720 3' -59.8 NC_005261.1 + 5513 0.66 0.74943
Target:  5'- gCgGCAGCGGCGGCgaggCCGCc---- -3'
miRNA:   3'- gGgUGUCGCCGCCGgaa-GGCGcuuca -5'
23720 3' -59.8 NC_005261.1 + 46941 0.66 0.74943
Target:  5'- gCUCAC-GCGGCccgcgGGCCagUCCGCGccGUc -3'
miRNA:   3'- -GGGUGuCGCCG-----CCGGa-AGGCGCuuCA- -5'
23720 3' -59.8 NC_005261.1 + 118933 0.66 0.74943
Target:  5'- -gCGCGGCGccgcGCGGCUggCCGCGgcGc -3'
miRNA:   3'- ggGUGUCGC----CGCCGGaaGGCGCuuCa -5'
23720 3' -59.8 NC_005261.1 + 81722 0.66 0.74943
Target:  5'- gCgCGCAGCaGCGGCaCgcgUCCGCagugGAAGa -3'
miRNA:   3'- -GgGUGUCGcCGCCG-Ga--AGGCG----CUUCa -5'
23720 3' -59.8 NC_005261.1 + 118867 0.66 0.74943
Target:  5'- gCCCGCGGCccuGGCcucGGCCa-CCGCGGGc- -3'
miRNA:   3'- -GGGUGUCG---CCG---CCGGaaGGCGCUUca -5'
23720 3' -59.8 NC_005261.1 + 72176 0.66 0.748486
Target:  5'- uCCCGgcguccgagacguUGGCGGCGGCCgcgCGCGGcAGa -3'
miRNA:   3'- -GGGU-------------GUCGCCGCCGGaagGCGCU-UCa -5'
23720 3' -59.8 NC_005261.1 + 102996 0.66 0.739953
Target:  5'- -aCACGGCGGCcGCCacgcgcUCCGCGuGGc -3'
miRNA:   3'- ggGUGUCGCCGcCGGa-----AGGCGCuUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.