miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23720 5' -59.2 NC_005261.1 + 40245 0.66 0.752872
Target:  5'- cGGGggCCGUgaGCGccauGGCGGCgGCCGCg- -3'
miRNA:   3'- -UCUagGGCA--UGC----UCGCCGaCGGCGau -5'
23720 5' -59.2 NC_005261.1 + 1298 0.66 0.752872
Target:  5'- gGGGcUCCCGUcGCcGGCGGCgGCaCGCg- -3'
miRNA:   3'- -UCU-AGGGCA-UGcUCGCCGaCG-GCGau -5'
23720 5' -59.2 NC_005261.1 + 31997 0.66 0.752872
Target:  5'- cGGUgCCCGUgccgccgcGCGAguaccggcagcGCGuGCUGCCGCg- -3'
miRNA:   3'- uCUA-GGGCA--------UGCU-----------CGC-CGACGGCGau -5'
23720 5' -59.2 NC_005261.1 + 135295 0.66 0.743256
Target:  5'- cGGGUUCCGcGCGAcCGGCgUGUCGCc- -3'
miRNA:   3'- -UCUAGGGCaUGCUcGCCG-ACGGCGau -5'
23720 5' -59.2 NC_005261.1 + 13084 0.66 0.743256
Target:  5'- cGG-CCCGUcgGCGGGCGGCggGCUcgGCUc -3'
miRNA:   3'- uCUaGGGCA--UGCUCGCCGa-CGG--CGAu -5'
23720 5' -59.2 NC_005261.1 + 69501 0.66 0.743256
Target:  5'- ---aCCUGUACGccGGCGGCggGCUGCc- -3'
miRNA:   3'- ucuaGGGCAUGC--UCGCCGa-CGGCGau -5'
23720 5' -59.2 NC_005261.1 + 100487 0.66 0.743256
Target:  5'- ---aCCCGguaGCaGAGCGGCgUGCCGUc- -3'
miRNA:   3'- ucuaGGGCa--UG-CUCGCCG-ACGGCGau -5'
23720 5' -59.2 NC_005261.1 + 2094 0.66 0.743256
Target:  5'- cAGGUCCCGcgucGCGAGCaGCaGCaCGCc- -3'
miRNA:   3'- -UCUAGGGCa---UGCUCGcCGaCG-GCGau -5'
23720 5' -59.2 NC_005261.1 + 79704 0.66 0.733544
Target:  5'- aGGAgaCCG-GCGGGCGGCUGuaGCa- -3'
miRNA:   3'- -UCUagGGCaUGCUCGCCGACggCGau -5'
23720 5' -59.2 NC_005261.1 + 80121 0.66 0.733544
Target:  5'- gGGcgCCgCGgcaGCG-GCGGC-GCCGCUAc -3'
miRNA:   3'- -UCuaGG-GCa--UGCuCGCCGaCGGCGAU- -5'
23720 5' -59.2 NC_005261.1 + 112661 0.66 0.733544
Target:  5'- ---gCCgaGUACGAGCGGCUGgaGCg- -3'
miRNA:   3'- ucuaGGg-CAUGCUCGCCGACggCGau -5'
23720 5' -59.2 NC_005261.1 + 115402 0.66 0.733544
Target:  5'- cGGGUCgUCGaccGCGGGCGGCagccgggGCCGCg- -3'
miRNA:   3'- -UCUAG-GGCa--UGCUCGCCGa------CGGCGau -5'
23720 5' -59.2 NC_005261.1 + 10485 0.66 0.732568
Target:  5'- cGG-CCCGcugcaccggcuuuUGCGcGCGGCcGCCGCUGc -3'
miRNA:   3'- uCUaGGGC-------------AUGCuCGCCGaCGGCGAU- -5'
23720 5' -59.2 NC_005261.1 + 51724 0.66 0.723745
Target:  5'- gGGGggUCGUGCGcacgcaGGCccccgGGCUGCCGCUGg -3'
miRNA:   3'- -UCUagGGCAUGC------UCG-----CCGACGGCGAU- -5'
23720 5' -59.2 NC_005261.1 + 127480 0.66 0.723745
Target:  5'- cAGAgUCCCagACGcuGGCGGCUGCCuGCc- -3'
miRNA:   3'- -UCU-AGGGcaUGC--UCGCCGACGG-CGau -5'
23720 5' -59.2 NC_005261.1 + 114334 0.66 0.723745
Target:  5'- aAGGUggaCUGgcuCGAGCGGCgcgugGCCGCg- -3'
miRNA:   3'- -UCUAg--GGCau-GCUCGCCGa----CGGCGau -5'
23720 5' -59.2 NC_005261.1 + 51516 0.66 0.713868
Target:  5'- cAGAUgCUGggcgcCGGGCuggGGCUGUCGCUAg -3'
miRNA:   3'- -UCUAgGGCau---GCUCG---CCGACGGCGAU- -5'
23720 5' -59.2 NC_005261.1 + 75470 0.66 0.713868
Target:  5'- cAGG-CgCCGgGCG-GCGGCgcggGCCGCUAc -3'
miRNA:   3'- -UCUaG-GGCaUGCuCGCCGa---CGGCGAU- -5'
23720 5' -59.2 NC_005261.1 + 63721 0.66 0.703923
Target:  5'- cAGGUCCgugagcggCGUGCGcauggccgcGGCGGCguagGCCGCc- -3'
miRNA:   3'- -UCUAGG--------GCAUGC---------UCGCCGa---CGGCGau -5'
23720 5' -59.2 NC_005261.1 + 125405 0.66 0.703923
Target:  5'- -cGUUCCGgagcggcGCGGGCGGCgcucagGCCGCc- -3'
miRNA:   3'- ucUAGGGCa------UGCUCGCCGa-----CGGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.