miRNA display CGI


Results 1 - 20 of 261 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23721 3' -66.4 NC_005261.1 + 20016 0.66 0.452205
Target:  5'- cCCGCaCCCguccgcggucagcgGGCCGGUuccgucCGGCGGuGUg -3'
miRNA:   3'- -GGCG-GGGa-------------CCGGCCGuuc---GCCGCC-CA- -5'
23721 3' -66.4 NC_005261.1 + 13238 0.66 0.451344
Target:  5'- -aGCCCCgaggccgaGGCCGGCGcgccgucaaagacuaGGUccacgcuguuguuGGCGGGg -3'
miRNA:   3'- ggCGGGGa-------CCGGCCGU---------------UCG-------------CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 132902 0.66 0.448768
Target:  5'- gCGCCgC-GGgCGGCGccgAGCGGCGGc- -3'
miRNA:   3'- gGCGGgGaCCgGCCGU---UCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 55271 0.66 0.448768
Target:  5'- gCGcCCCCUGG-CGcGCcGGaGGCGGGg -3'
miRNA:   3'- gGC-GGGGACCgGC-CGuUCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 4883 0.66 0.448768
Target:  5'- gCCGCCUCagccgcGGCCgccucGGCuucGGCGGCGGc- -3'
miRNA:   3'- -GGCGGGGa-----CCGG-----CCGu--UCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 97403 0.66 0.448768
Target:  5'- cCUGCCgCgGGCuUGGCGGGCGcGcCGGGc -3'
miRNA:   3'- -GGCGGgGaCCG-GCCGUUCGC-C-GCCCa -5'
23721 3' -66.4 NC_005261.1 + 121422 0.66 0.448768
Target:  5'- gCCGCCgCCgcuacgGGgCGGC--GgGGCGGGc -3'
miRNA:   3'- -GGCGG-GGa-----CCgGCCGuuCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 43759 0.66 0.447055
Target:  5'- gUGCCCCUgaaggugcucgugGGgCGGCGcgcggagGGCGccGCGGGUg -3'
miRNA:   3'- gGCGGGGA-------------CCgGCCGU-------UCGC--CGCCCA- -5'
23721 3' -66.4 NC_005261.1 + 59749 0.66 0.4462
Target:  5'- gCCGCCCuccaccaggcaggcCUccaugugcucGGCCGcaGCGacGGCGGCGGGc -3'
miRNA:   3'- -GGCGGG--------------GA----------CCGGC--CGU--UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 55036 0.66 0.443641
Target:  5'- gCCgGCCCCgcgcagcugcgcggGGCCGGCGAGCucGGCc--- -3'
miRNA:   3'- -GG-CGGGGa-------------CCGGCCGUUCG--CCGccca -5'
23721 3' -66.4 NC_005261.1 + 4376 0.66 0.443641
Target:  5'- cCCGCgCCgccgaagcgcacgcGGCCGGgcGGCGGCGGc- -3'
miRNA:   3'- -GGCGgGGa-------------CCGGCCguUCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 95003 0.66 0.441089
Target:  5'- cCCGCCCUgcggGGCgGGCuauaaagccgccgccGGCGGCGcucGGc -3'
miRNA:   3'- -GGCGGGGa---CCGgCCGu--------------UCGCCGC---CCa -5'
23721 3' -66.4 NC_005261.1 + 2639 0.66 0.440241
Target:  5'- -gGCCCagcacgcgGGCgGGC-AGCGGCGGc- -3'
miRNA:   3'- ggCGGGga------CCGgCCGuUCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 20612 0.66 0.440241
Target:  5'- gCGCCCCUGGCCcGCAuccgggacuGCcGGCccGGUu -3'
miRNA:   3'- gGCGGGGACCGGcCGUu--------CG-CCGc-CCA- -5'
23721 3' -66.4 NC_005261.1 + 58774 0.66 0.440241
Target:  5'- gCGCCCCcagcGcGCCGGCcAGCGcGCGcaGGa -3'
miRNA:   3'- gGCGGGGa---C-CGGCCGuUCGC-CGC--CCa -5'
23721 3' -66.4 NC_005261.1 + 98651 0.66 0.440241
Target:  5'- gCCaCUCCUcGGCCccccaGGCGAG-GGCGGGc -3'
miRNA:   3'- -GGcGGGGA-CCGG-----CCGUUCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 75068 0.66 0.431806
Target:  5'- aCCGCgCgc-GCCGGCGGGggcuCGGCGGGc -3'
miRNA:   3'- -GGCGgGgacCGGCCGUUC----GCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 48244 0.66 0.431806
Target:  5'- aCCGCCCCcgcagcgcggGGCCaauGCAa--GGCGGGg -3'
miRNA:   3'- -GGCGGGGa---------CCGGc--CGUucgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 2604 0.66 0.431806
Target:  5'- gCCGCCgUCggcggcggGGCCGcCGGGCGGCauGGGg -3'
miRNA:   3'- -GGCGG-GGa-------CCGGCcGUUCGCCG--CCCa -5'
23721 3' -66.4 NC_005261.1 + 14988 0.66 0.431806
Target:  5'- gCCGCgCC-GGCCGcGCccgGAGCG-CGGGa -3'
miRNA:   3'- -GGCGgGGaCCGGC-CG---UUCGCcGCCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.