miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23721 3' -66.4 NC_005261.1 + 77633 0.66 0.407082
Target:  5'- aUGgCCCUGGCCGGCGccaucgccgacGGCcGGCGc-- -3'
miRNA:   3'- gGCgGGGACCGGCCGU-----------UCG-CCGCcca -5'
23721 3' -66.4 NC_005261.1 + 23794 0.66 0.423467
Target:  5'- cUCGCCggggCaGGCCGGCu-GgGGCGGGc -3'
miRNA:   3'- -GGCGGg---GaCCGGCCGuuCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 102944 0.66 0.407082
Target:  5'- gCCGCCgCUGcGgCGGCG-GCcGCGGGc -3'
miRNA:   3'- -GGCGGgGAC-CgGCCGUuCGcCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 20016 0.66 0.452205
Target:  5'- cCCGCaCCCguccgcggucagcgGGCCGGUuccgucCGGCGGuGUg -3'
miRNA:   3'- -GGCG-GGGa-------------CCGGCCGuuc---GCCGCC-CA- -5'
23721 3' -66.4 NC_005261.1 + 115043 0.66 0.407082
Target:  5'- gCCaGCaCCCUGGCgaaGGgGGGCggGGUGGGg -3'
miRNA:   3'- -GG-CG-GGGACCGg--CCgUUCG--CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 10684 0.66 0.423467
Target:  5'- gCCGUCCCcucCCGGCAaaGGCGuucGCGGGc -3'
miRNA:   3'- -GGCGGGGaccGGCCGU--UCGC---CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 106553 0.66 0.407082
Target:  5'- gCCGCgUCCgGGCCGGCGcGCGccggcccCGGGg -3'
miRNA:   3'- -GGCG-GGGaCCGGCCGUuCGCc------GCCCa -5'
23721 3' -66.4 NC_005261.1 + 115466 0.66 0.403854
Target:  5'- uCCGCCUCggugucggucgcgGGCuCGGCc-GCGGCGGc- -3'
miRNA:   3'- -GGCGGGGa------------CCG-GCCGuuCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 98214 0.66 0.415225
Target:  5'- gCGCCgCCa---CGGCAGcGCGGCGGGc -3'
miRNA:   3'- gGCGG-GGaccgGCCGUU-CGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 60289 0.66 0.415225
Target:  5'- uCCGCCCCcgcGGCCcGCAGGCaGuCGGc- -3'
miRNA:   3'- -GGCGGGGa--CCGGcCGUUCGcC-GCCca -5'
23721 3' -66.4 NC_005261.1 + 5710 0.66 0.415225
Target:  5'- gCCGgcCCCCUuucgcggagaGGCCGGCGggagaAGCGcGCGcGGa -3'
miRNA:   3'- -GGC--GGGGA----------CCGGCCGU-----UCGC-CGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 130598 0.66 0.415225
Target:  5'- cCCGCgCCUGGCCcgucuuugccuGCGccuucaacAGCGcGCGGGg -3'
miRNA:   3'- -GGCGgGGACCGGc----------CGU--------UCGC-CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 81595 0.66 0.407082
Target:  5'- cUCGCCgaCCguauCCGGCGcccGCGGCGGGUu -3'
miRNA:   3'- -GGCGG--GGacc-GGCCGUu--CGCCGCCCA- -5'
23721 3' -66.4 NC_005261.1 + 38261 0.66 0.415225
Target:  5'- aCGCCagCCUgGGCUGG-GGGCGGCuGGUg -3'
miRNA:   3'- gGCGG--GGA-CCGGCCgUUCGCCGcCCA- -5'
23721 3' -66.4 NC_005261.1 + 135068 0.66 0.41851
Target:  5'- cCCGCCgCUuuCCGGCGgcgggcucgcggcccGGCGGCGGa- -3'
miRNA:   3'- -GGCGGgGAccGGCCGU---------------UCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 23851 0.66 0.423467
Target:  5'- cUCGCCggggCaGGCCGGCu-GgGGCGGGc -3'
miRNA:   3'- -GGCGGg---GaCCGGCCGuuCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 28865 0.66 0.415225
Target:  5'- gCCGCCCUUGa--GGCu-GCGGCGcGGa -3'
miRNA:   3'- -GGCGGGGACcggCCGuuCGCCGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 35446 0.66 0.415225
Target:  5'- cCCGCCCCgcgggucuaGGCgCGGCGcGCGcGCgucccgGGGUc -3'
miRNA:   3'- -GGCGGGGa--------CCG-GCCGUuCGC-CG------CCCA- -5'
23721 3' -66.4 NC_005261.1 + 101461 0.66 0.407082
Target:  5'- -gGCCCCaGcGCC-GCcGGCGGCGGcGUg -3'
miRNA:   3'- ggCGGGGaC-CGGcCGuUCGCCGCC-CA- -5'
23721 3' -66.4 NC_005261.1 + 24888 0.66 0.41851
Target:  5'- cCCGCCCCcuugcccGGCgGGCGccccuucaagcccucGGCGGCugcagccgccgaGGGg -3'
miRNA:   3'- -GGCGGGGa------CCGgCCGU---------------UCGCCG------------CCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.