miRNA display CGI


Results 41 - 60 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23721 3' -66.4 NC_005261.1 + 133331 0.66 0.423467
Target:  5'- -aGCUCCUG-CCGGCAcGCGcGCGcGGc -3'
miRNA:   3'- ggCGGGGACcGGCCGUuCGC-CGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 60289 0.66 0.415225
Target:  5'- uCCGCCCCcgcGGCCcGCAGGCaGuCGGc- -3'
miRNA:   3'- -GGCGGGGa--CCGGcCGUUCGcC-GCCca -5'
23721 3' -66.4 NC_005261.1 + 23851 0.66 0.423467
Target:  5'- cUCGCCggggCaGGCCGGCu-GgGGCGGGc -3'
miRNA:   3'- -GGCGGg---GaCCGGCCGuuCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 34732 0.66 0.415225
Target:  5'- gCGcCCCCUGG-CGGCc-GCGGgGuGGUg -3'
miRNA:   3'- gGC-GGGGACCgGCCGuuCGCCgC-CCA- -5'
23721 3' -66.4 NC_005261.1 + 10684 0.66 0.423467
Target:  5'- gCCGUCCCcucCCGGCAaaGGCGuucGCGGGc -3'
miRNA:   3'- -GGCGGGGaccGGCCGU--UCGC---CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 20612 0.66 0.440241
Target:  5'- gCGCCCCUGGCCcGCAuccgggacuGCcGGCccGGUu -3'
miRNA:   3'- gGCGGGGACCGGcCGUu--------CG-CCGc-CCA- -5'
23721 3' -66.4 NC_005261.1 + 102944 0.66 0.407082
Target:  5'- gCCGCCgCUGcGgCGGCG-GCcGCGGGc -3'
miRNA:   3'- -GGCGGgGAC-CgGCCGUuCGcCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 98369 0.66 0.431806
Target:  5'- gCGCgggCUCUGGCgGGCGcaauaccggcguGGgGGCGGGc -3'
miRNA:   3'- gGCG---GGGACCGgCCGU------------UCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 23794 0.66 0.423467
Target:  5'- cUCGCCggggCaGGCCGGCu-GgGGCGGGc -3'
miRNA:   3'- -GGCGGg---GaCCGGCCGuuCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 101461 0.66 0.407082
Target:  5'- -gGCCCCaGcGCC-GCcGGCGGCGGcGUg -3'
miRNA:   3'- ggCGGGGaC-CGGcCGuUCGCCGCC-CA- -5'
23721 3' -66.4 NC_005261.1 + 38470 0.66 0.423467
Target:  5'- gCGUUCCUGGagcagcaCGGCc-GCGGCGGcGUc -3'
miRNA:   3'- gGCGGGGACCg------GCCGuuCGCCGCC-CA- -5'
23721 3' -66.4 NC_005261.1 + 59749 0.66 0.4462
Target:  5'- gCCGCCCuccaccaggcaggcCUccaugugcucGGCCGcaGCGacGGCGGCGGGc -3'
miRNA:   3'- -GGCGGG--------------GA----------CCGGC--CGU--UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 78142 0.67 0.352982
Target:  5'- gCCGCCCCgGcGCCcGCcgcuGcCGGCGGGc -3'
miRNA:   3'- -GGCGGGGaC-CGGcCGuu--C-GCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 38537 0.67 0.358157
Target:  5'- gCGCgCCgGGCacagcgccggcgcgCGGCcauGCGGCGGGUu -3'
miRNA:   3'- gGCGgGGaCCG--------------GCCGuu-CGCCGCCCA- -5'
23721 3' -66.4 NC_005261.1 + 3671 0.67 0.360392
Target:  5'- -gGCCgC-GGCCGGCAGGCcGCGGc- -3'
miRNA:   3'- ggCGGgGaCCGGCCGUUCGcCGCCca -5'
23721 3' -66.4 NC_005261.1 + 129592 0.67 0.352982
Target:  5'- gCGCCgCgGGacacgCGGCAAuuucGCGGCGGGg -3'
miRNA:   3'- gGCGGgGaCCg----GCCGUU----CGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 126683 0.67 0.360392
Target:  5'- -gGCCCUccuccgaGGCCGGCGgugcgggaAGCGGCuGGUu -3'
miRNA:   3'- ggCGGGGa------CCGGCCGU--------UCGCCGcCCA- -5'
23721 3' -66.4 NC_005261.1 + 59647 0.67 0.352982
Target:  5'- gCUGUCCUcgaGGCgGGCGAcuGCGGcCGGGUc -3'
miRNA:   3'- -GGCGGGGa--CCGgCCGUU--CGCC-GCCCA- -5'
23721 3' -66.4 NC_005261.1 + 118620 0.67 0.352982
Target:  5'- gCCGUugCCCUGGCC-GCc-GCGGCGGc- -3'
miRNA:   3'- -GGCG--GGGACCGGcCGuuCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 37052 0.67 0.352982
Target:  5'- cCUGCCCCcGGuCCcGCGAGCGGUGa-- -3'
miRNA:   3'- -GGCGGGGaCC-GGcCGUUCGCCGCcca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.