miRNA display CGI


Results 81 - 100 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23721 3' -66.4 NC_005261.1 + 60033 0.67 0.391101
Target:  5'- cCCGCCgCC--GUCGGCGccgacGGCGGCGGcGa -3'
miRNA:   3'- -GGCGG-GGacCGGCCGU-----UCGCCGCC-Ca -5'
23721 3' -66.4 NC_005261.1 + 78039 0.67 0.39904
Target:  5'- uCCGCCCCa-GCCGGU-GGUcGCGGGc -3'
miRNA:   3'- -GGCGGGGacCGGCCGuUCGcCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 137690 0.67 0.39904
Target:  5'- aCCGCCCCUcgugcagcgGGCCccgcGCGAcccCGGgGGGUg -3'
miRNA:   3'- -GGCGGGGA---------CCGGc---CGUUc--GCCgCCCA- -5'
23721 3' -66.4 NC_005261.1 + 68199 0.67 0.352982
Target:  5'- cUCGCCCCcgccGCCGGCGcggccgacaacGGCgacccugacGGCGGGg -3'
miRNA:   3'- -GGCGGGGac--CGGCCGU-----------UCG---------CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 117752 0.67 0.351513
Target:  5'- gCCGCCCCcaacgcgacucgGGuCCGGaucGgGGCGGGg -3'
miRNA:   3'- -GGCGGGGa-----------CC-GGCCguuCgCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 117701 0.67 0.352982
Target:  5'- gCCGgCCCUgaGGCCGGC--GC-GCGGGc -3'
miRNA:   3'- -GGCgGGGA--CCGGCCGuuCGcCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 12299 0.67 0.352982
Target:  5'- uCCGCCgCgGGCacgGGCGcguAGcCGGCGGGc -3'
miRNA:   3'- -GGCGGgGaCCGg--CCGU---UC-GCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 32915 0.67 0.352982
Target:  5'- gCGCgCgUGGggggCGGCGGGCGGgGGGg -3'
miRNA:   3'- gGCGgGgACCg---GCCGUUCGCCgCCCa -5'
23721 3' -66.4 NC_005261.1 + 59686 0.67 0.352982
Target:  5'- gCCGCCCUcGGCCaGCAcGCGcucCGGGc -3'
miRNA:   3'- -GGCGGGGaCCGGcCGUuCGCc--GCCCa -5'
23721 3' -66.4 NC_005261.1 + 3671 0.67 0.360392
Target:  5'- -gGCCgC-GGCCGGCAGGCcGCGGc- -3'
miRNA:   3'- ggCGGgGaCCGGCCGUUCGcCGCCca -5'
23721 3' -66.4 NC_005261.1 + 90389 0.67 0.352982
Target:  5'- -gGCCCCgccggcggGGCUGGCGccCGGCGcGGa -3'
miRNA:   3'- ggCGGGGa-------CCGGCCGUucGCCGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 36620 0.67 0.397444
Target:  5'- gCGCCCC-GGCgcacaaaCGGCGcgaagccGGCGcGCGGGc -3'
miRNA:   3'- gGCGGGGaCCG-------GCCGU-------UCGC-CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 94846 0.68 0.317567
Target:  5'- gCGCgCCUGGCCucGGCGcucgcgcacGGCccgGGCGGGc -3'
miRNA:   3'- gGCGgGGACCGG--CCGU---------UCG---CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 106854 0.68 0.338488
Target:  5'- cCCGCCgCCUGGggGGCGGGCGuccGCGGc- -3'
miRNA:   3'- -GGCGG-GGACCggCCGUUCGC---CGCCca -5'
23721 3' -66.4 NC_005261.1 + 32531 0.68 0.338488
Target:  5'- cCCgGCCCC-GGCCccGGCc-GCGGCGcGGg -3'
miRNA:   3'- -GG-CGGGGaCCGG--CCGuuCGCCGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 126995 0.68 0.345681
Target:  5'- aCCGUCaggGGCCGaccccgccGCAGGCGGCGGc- -3'
miRNA:   3'- -GGCGGggaCCGGC--------CGUUCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 109101 0.68 0.345681
Target:  5'- -gGUCCCggacGCCGGCcaugaGGGCGGCGGuGUc -3'
miRNA:   3'- ggCGGGGac--CGGCCG-----UUCGCCGCC-CA- -5'
23721 3' -66.4 NC_005261.1 + 15152 0.68 0.345681
Target:  5'- gCCGUCCgCggugggGGUgGGCGuAGCGGCGGcGg -3'
miRNA:   3'- -GGCGGG-Ga-----CCGgCCGU-UCGCCGCC-Ca -5'
23721 3' -66.4 NC_005261.1 + 21355 0.68 0.345681
Target:  5'- cCCGCCCCUGGCuugagcccugacCGcGCcGGaGGCGcGGUc -3'
miRNA:   3'- -GGCGGGGACCG------------GC-CGuUCgCCGC-CCA- -5'
23721 3' -66.4 NC_005261.1 + 98084 0.68 0.345681
Target:  5'- gUGUCCUUggagaaucugggGGCgCGGCGGGCGGCGaGGc -3'
miRNA:   3'- gGCGGGGA------------CCG-GCCGUUCGCCGC-CCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.