miRNA display CGI


Results 61 - 80 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23721 3' -66.4 NC_005261.1 + 27462 0.72 0.168
Target:  5'- gCCGCCCCgcggGGCgGGCAGGCccucccCGGGc -3'
miRNA:   3'- -GGCGGGGa---CCGgCCGUUCGcc----GCCCa -5'
23721 3' -66.4 NC_005261.1 + 42914 0.72 0.168
Target:  5'- gCGCUCCggGGCCGcCGGGCGaGUGGGUg -3'
miRNA:   3'- gGCGGGGa-CCGGCcGUUCGC-CGCCCA- -5'
23721 3' -66.4 NC_005261.1 + 77061 0.72 0.168
Target:  5'- aCCGCgCCUGGCCGGUgccgcgcgAGGCgcuGGCGcGGa -3'
miRNA:   3'- -GGCGgGGACCGGCCG--------UUCG---CCGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 88443 0.72 0.172039
Target:  5'- aCCGCUgCUGGCCGcGCcgcguGAGCGuGUGGGc -3'
miRNA:   3'- -GGCGGgGACCGGC-CG-----UUCGC-CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 97890 0.72 0.172039
Target:  5'- -aGCCCCgGGCCGGCGgaccgucugGGCGcCGGGc -3'
miRNA:   3'- ggCGGGGaCCGGCCGU---------UCGCcGCCCa -5'
23721 3' -66.4 NC_005261.1 + 2779 0.72 0.172039
Target:  5'- cCCGCCCCcgaggGGCUGccGCcGGCGGcCGGGa -3'
miRNA:   3'- -GGCGGGGa----CCGGC--CGuUCGCC-GCCCa -5'
23721 3' -66.4 NC_005261.1 + 109313 0.72 0.176164
Target:  5'- gCCG-CCCUGGCCuccGCGAGCGcggccGCGGGg -3'
miRNA:   3'- -GGCgGGGACCGGc--CGUUCGC-----CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 92674 0.71 0.21243
Target:  5'- aCCGCUCCagaGGCaggaaCGGCGAGCGggaGCGGGa -3'
miRNA:   3'- -GGCGGGGa--CCG-----GCCGUUCGC---CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 134378 0.71 0.21243
Target:  5'- gCGCCgCUGGCgaCGGCGAGa-GCGGGa -3'
miRNA:   3'- gGCGGgGACCG--GCCGUUCgcCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 135443 0.71 0.21243
Target:  5'- gCCGCCCa-GGCgGcGCGGGCGcuGCGGGa -3'
miRNA:   3'- -GGCGGGgaCCGgC-CGUUCGC--CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 4533 0.71 0.21639
Target:  5'- gCCGCggcgagggcgccgggCCCUGGCCuuggcuggauccgcgGGCGGGUccGGCGGGg -3'
miRNA:   3'- -GGCG---------------GGGACCGG---------------CCGUUCG--CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 27292 0.71 0.21739
Target:  5'- aCCGCCCUcgcgagcaGGCCGGgcCAAcGCGcGCGGGUc -3'
miRNA:   3'- -GGCGGGGa-------CCGGCC--GUU-CGC-CGCCCA- -5'
23721 3' -66.4 NC_005261.1 + 134553 0.71 0.211939
Target:  5'- aCCGCCCCuugcUGGgCGGCGccgcGGCugcgcagGGCGGGc -3'
miRNA:   3'- -GGCGGGG----ACCgGCCGU----UCG-------CCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 23150 0.71 0.207568
Target:  5'- uCgGCCCCaaagagugGGcCCGGCAGGCGcGcCGGGg -3'
miRNA:   3'- -GgCGGGGa-------CC-GGCCGUUCGC-C-GCCCa -5'
23721 3' -66.4 NC_005261.1 + 3152 0.71 0.207568
Target:  5'- cCCGUCCgaGGCCccGGC-GGCGGCGGc- -3'
miRNA:   3'- -GGCGGGgaCCGG--CCGuUCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 63557 0.71 0.206128
Target:  5'- gUGCCCgCUggcgcGGCCGGCAugaugggcccgaagAGCGGCGcGGg -3'
miRNA:   3'- gGCGGG-GA-----CCGGCCGU--------------UCGCCGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 108893 0.71 0.202802
Target:  5'- gCCGCgCUgcccGCCGGCGAGCGgggcGCGGGg -3'
miRNA:   3'- -GGCGgGGac--CGGCCGUUCGC----CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 137899 0.71 0.202802
Target:  5'- gCCGCCCCUGGUgcucgcgGGCcccGCGaGCGGGc -3'
miRNA:   3'- -GGCGGGGACCGg------CCGuu-CGC-CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 216 0.71 0.202802
Target:  5'- gCCGCCCCUGGUgcucgcgGGCcccGCGaGCGGGc -3'
miRNA:   3'- -GGCGGGGACCGg------CCGuu-CGC-CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 30357 0.71 0.221939
Target:  5'- gCgGCCCUgaaGGCCGGCGcgccgGGCGccgcggcGCGGGUg -3'
miRNA:   3'- -GgCGGGGa--CCGGCCGU-----UCGC-------CGCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.