miRNA display CGI


Results 41 - 60 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23721 3' -66.4 NC_005261.1 + 60230 0.73 0.15639
Target:  5'- gCGCCCCcagGGCCGccuccGCc-GCGGCGGGa -3'
miRNA:   3'- gGCGGGGa--CCGGC-----CGuuCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 59718 0.73 0.160177
Target:  5'- cCCGCCCgCcGGgCGGC-AGCGGCGGc- -3'
miRNA:   3'- -GGCGGG-GaCCgGCCGuUCGCCGCCca -5'
23721 3' -66.4 NC_005261.1 + 69289 0.73 0.160177
Target:  5'- gCCGaCCCCggcgcgggGcGCCGGU-GGCGGCGGGa -3'
miRNA:   3'- -GGC-GGGGa-------C-CGGCCGuUCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 98036 0.73 0.160177
Target:  5'- aCGCCgcgguaCUGGCgGccGCGGGCGGCGGGa -3'
miRNA:   3'- gGCGGg-----GACCGgC--CGUUCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 93549 0.73 0.164047
Target:  5'- gCCGCCCaguagcGGUcgaCGGCGGuGCGGCGGGa -3'
miRNA:   3'- -GGCGGGga----CCG---GCCGUU-CGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 50617 0.73 0.164047
Target:  5'- gCGCCCCgauugGuGCUccacGCGGGCGGCGGGg -3'
miRNA:   3'- gGCGGGGa----C-CGGc---CGUUCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 33581 0.72 0.167601
Target:  5'- gCCaGCCCCgcgaGcaccaggggcggcGCCGGCGcgGGCGGCGGGg -3'
miRNA:   3'- -GG-CGGGGa---C-------------CGGCCGU--UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 77754 0.72 0.168
Target:  5'- -aGCCCCUacgcaGCCGG--GGCGGCGGGg -3'
miRNA:   3'- ggCGGGGAc----CGGCCguUCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 27462 0.72 0.168
Target:  5'- gCCGCCCCgcggGGCgGGCAGGCccucccCGGGc -3'
miRNA:   3'- -GGCGGGGa---CCGgCCGUUCGcc----GCCCa -5'
23721 3' -66.4 NC_005261.1 + 42914 0.72 0.168
Target:  5'- gCGCUCCggGGCCGcCGGGCGaGUGGGUg -3'
miRNA:   3'- gGCGGGGa-CCGGCcGUUCGC-CGCCCA- -5'
23721 3' -66.4 NC_005261.1 + 77061 0.72 0.168
Target:  5'- aCCGCgCCUGGCCGGUgccgcgcgAGGCgcuGGCGcGGa -3'
miRNA:   3'- -GGCGgGGACCGGCCG--------UUCG---CCGC-CCa -5'
23721 3' -66.4 NC_005261.1 + 2779 0.72 0.172039
Target:  5'- cCCGCCCCcgaggGGCUGccGCcGGCGGcCGGGa -3'
miRNA:   3'- -GGCGGGGa----CCGGC--CGuUCGCC-GCCCa -5'
23721 3' -66.4 NC_005261.1 + 97890 0.72 0.172039
Target:  5'- -aGCCCCgGGCCGGCGgaccgucugGGCGcCGGGc -3'
miRNA:   3'- ggCGGGGaCCGGCCGU---------UCGCcGCCCa -5'
23721 3' -66.4 NC_005261.1 + 88443 0.72 0.172039
Target:  5'- aCCGCUgCUGGCCGcGCcgcguGAGCGuGUGGGc -3'
miRNA:   3'- -GGCGGgGACCGGC-CG-----UUCGC-CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 109313 0.72 0.176164
Target:  5'- gCCG-CCCUGGCCuccGCGAGCGcggccGCGGGg -3'
miRNA:   3'- -GGCgGGGACCGGc--CGUUCGC-----CGCCCa -5'
23721 3' -66.4 NC_005261.1 + 123075 0.72 0.176581
Target:  5'- -gGCCCCgagaggcGGCCGGCcacgccauuucgccGCGGCGGGa -3'
miRNA:   3'- ggCGGGGa------CCGGCCGuu------------CGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 36396 0.72 0.177838
Target:  5'- gCCGgCCCUGGCCcacauagcgggauggGGCAGGCGGCc--- -3'
miRNA:   3'- -GGCgGGGACCGG---------------CCGUUCGCCGccca -5'
23721 3' -66.4 NC_005261.1 + 12737 0.72 0.179104
Target:  5'- gCCGgcCCCCUGGgcgggcCCGGCGaggucguaggcggcGGUGGCGGGg -3'
miRNA:   3'- -GGC--GGGGACC------GGCCGU--------------UCGCCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 98188 0.72 0.180377
Target:  5'- gCCGCCgggGGCgCGGCGGGCaGCGGGc -3'
miRNA:   3'- -GGCGGggaCCG-GCCGUUCGcCGCCCa -5'
23721 3' -66.4 NC_005261.1 + 5276 0.72 0.180377
Target:  5'- aCGCCa-UGGCCGGCcgcgguGCGcGCGGGUc -3'
miRNA:   3'- gGCGGggACCGGCCGuu----CGC-CGCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.