Results 61 - 80 of 261 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23721 | 3' | -66.4 | NC_005261.1 | + | 24377 | 0.72 | 0.180377 |
Target: 5'- gUGCUCCcGGUgGGCucgucGGCGGCGGGg -3' miRNA: 3'- gGCGGGGaCCGgCCGu----UCGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 1382 | 0.72 | 0.184244 |
Target: 5'- gCGUCCCaGGCCacgccgGGCGccgcggccgcggcGGCGGCGGGg -3' miRNA: 3'- gGCGGGGaCCGG------CCGU-------------UCGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 68146 | 0.72 | 0.184678 |
Target: 5'- aCCGCgCCgUGGCCGGCuacacGCGcGCGGa- -3' miRNA: 3'- -GGCG-GGgACCGGCCGuu---CGC-CGCCca -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 33360 | 0.72 | 0.184678 |
Target: 5'- aCCGCCgCCgGGCCGcGcCGGGCuGCGGGc -3' miRNA: 3'- -GGCGG-GGaCCGGC-C-GUUCGcCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 87953 | 0.72 | 0.189071 |
Target: 5'- gCCGCCac-GGCCcGCcGGCGGCGGGc -3' miRNA: 3'- -GGCGGggaCCGGcCGuUCGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 97565 | 0.72 | 0.189071 |
Target: 5'- uCCGCCCggGGuuGGCucGGUGGCGcGGg -3' miRNA: 3'- -GGCGGGgaCCggCCGu-UCGCCGC-CCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 125884 | 0.72 | 0.190853 |
Target: 5'- gCGCCCUUGGCUgaaGGCGccugagccagauguGUGGCGGGg -3' miRNA: 3'- gGCGGGGACCGG---CCGUu-------------CGCCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 35044 | 0.71 | 0.198131 |
Target: 5'- gCCGCCCUaacggcGGCCGcGC-GGCGGCGGu- -3' miRNA: 3'- -GGCGGGGa-----CCGGC-CGuUCGCCGCCca -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 108893 | 0.71 | 0.202802 |
Target: 5'- gCCGCgCUgcccGCCGGCGAGCGgggcGCGGGg -3' miRNA: 3'- -GGCGgGGac--CGGCCGUUCGC----CGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 137899 | 0.71 | 0.202802 |
Target: 5'- gCCGCCCCUGGUgcucgcgGGCcccGCGaGCGGGc -3' miRNA: 3'- -GGCGGGGACCGg------CCGuu-CGC-CGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 216 | 0.71 | 0.202802 |
Target: 5'- gCCGCCCCUGGUgcucgcgGGCcccGCGaGCGGGc -3' miRNA: 3'- -GGCGGGGACCGg------CCGuu-CGC-CGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 63557 | 0.71 | 0.206128 |
Target: 5'- gUGCCCgCUggcgcGGCCGGCAugaugggcccgaagAGCGGCGcGGg -3' miRNA: 3'- gGCGGG-GA-----CCGGCCGU--------------UCGCCGC-CCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 3152 | 0.71 | 0.207568 |
Target: 5'- cCCGUCCgaGGCCccGGC-GGCGGCGGc- -3' miRNA: 3'- -GGCGGGgaCCGG--CCGuUCGCCGCCca -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 23150 | 0.71 | 0.207568 |
Target: 5'- uCgGCCCCaaagagugGGcCCGGCAGGCGcGcCGGGg -3' miRNA: 3'- -GgCGGGGa-------CC-GGCCGUUCGC-C-GCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 134553 | 0.71 | 0.211939 |
Target: 5'- aCCGCCCCuugcUGGgCGGCGccgcGGCugcgcagGGCGGGc -3' miRNA: 3'- -GGCGGGG----ACCgGCCGU----UCG-------CCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 135443 | 0.71 | 0.21243 |
Target: 5'- gCCGCCCa-GGCgGcGCGGGCGcuGCGGGa -3' miRNA: 3'- -GGCGGGgaCCGgC-CGUUCGC--CGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 134378 | 0.71 | 0.21243 |
Target: 5'- gCGCCgCUGGCgaCGGCGAGa-GCGGGa -3' miRNA: 3'- gGCGGgGACCG--GCCGUUCgcCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 92674 | 0.71 | 0.21243 |
Target: 5'- aCCGCUCCagaGGCaggaaCGGCGAGCGggaGCGGGa -3' miRNA: 3'- -GGCGGGGa--CCG-----GCCGUUCGC---CGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 4533 | 0.71 | 0.21639 |
Target: 5'- gCCGCggcgagggcgccgggCCCUGGCCuuggcuggauccgcgGGCGGGUccGGCGGGg -3' miRNA: 3'- -GGCG---------------GGGACCGG---------------CCGUUCG--CCGCCCa -5' |
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23721 | 3' | -66.4 | NC_005261.1 | + | 27292 | 0.71 | 0.21739 |
Target: 5'- aCCGCCCUcgcgagcaGGCCGGgcCAAcGCGcGCGGGUc -3' miRNA: 3'- -GGCGGGGa-------CCGGCC--GUU-CGC-CGCCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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